| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,419,551 – 4,419,665 |
| Length | 114 |
| Max. P | 0.655629 |
| Location | 4,419,551 – 4,419,665 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -45.85 |
| Consensus MFE | -26.49 |
| Energy contribution | -27.68 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4419551 114 - 23771897 AAAAGGCACCGACGGCUGCUUGUAAUGAUAGCCAUCCUCCUGGAGAUCUGUGUCCAGGUGGGAGACAUCCGCGUGGACACCCGCUGCCAAGAGCAG---GGCCACCAGAGGCAGAAA--- ....(((.((((.((((((.......).))))).))(((.(((((....(((((((.(((((.....))))).)))))))...)).))).)))..)---))))..............--- ( -42.50) >DroPse_CAF1 2079 117 - 1 GAAGGGCACCGAUGGCUGCUUGUAGUGGUAGCCGUCCUCUUGCAGAUCCGUGUCCAGGUGAGAGACAUCCGCGUGGACGCCGGCCGCGACGAGCAGCGCGGCCACCAGGGGCAGGAG--- ..........((((((((((......))))))))))(((((((...((((((((((.(((.((....))))).))))))).(((((((.(.....))))))))....))))))))))--- ( -61.20) >DroGri_CAF1 3696 111 - 1 AAACGGUUGCGAUGGCUGCUUGUAAUGGUAUCCAUCCUCGCGUAAAUCUGUGUCCAGGUGCGAGACAUCCGCAUGGACGCUGGC---AGCGAGCAG---CGCCGCCAGAGGCAGUAA--- .....((((((((((.((((......)))).))))).((((((......(((((((.(((.((....))))).)))))))..))---.))))))))---)(((......))).....--- ( -43.60) >DroEre_CAF1 1793 114 - 1 GAAGGGCACCGACGGCUGCUUGUAAUGGUAGCCAUCCUCCUGGAGAUCUGUGUCCAGGUGGGAGACAUCCGCGUGGACACCCGCUGCCAAGAGCAG---GACCACCAGAGGCAGAAA--- .....((...((.(((((((......))))))).))(((.(((.(.((.(((((((.(((((.....))))).)))))))...((((.....))))---)).).)))))))).....--- ( -45.20) >DroMoj_CAF1 2542 114 - 1 AAACGGCUGCGACGGCUGCUUGUAAUAAUAUCCAUCCUCUCGCAAAUCCGUGUCCAGAUGCGAGACAUCCGCUGAGACGCCGGCCGCAGCUAGCGC---CGCCACCAGGGCCAAUAG--- ....(((.(((..((((((..................(((((((..((........))))))))).....((((......)))).))))))..)))---.)))..............--- ( -36.40) >DroAna_CAF1 1764 117 - 1 AAACGGCACCGAAGGCUGCUUGUAAUGGUAGCCAUCCUCCUGGAGAUCCGUGUCCAGGUGGGAGACAUCCGCCCGGAUGCCUGCUACCAAGAGCAG---AACCACCAGCGGCACAAAGCA ....(((((.((.(((((((......))))))).(((....)))..)).)))))..(((((....(((((....))))).(((((......)))))---..))))).((........)). ( -46.20) >consensus AAACGGCACCGACGGCUGCUUGUAAUGGUAGCCAUCCUCCUGGAGAUCCGUGUCCAGGUGGGAGACAUCCGCGUGGACGCCGGCUGCCAAGAGCAG___GGCCACCAGAGGCAGAAA___ ....(((...((.(((((((......))))))).)).............(((((((.(((.((....))))).)))))))..)))...............(((......)))........ (-26.49 = -27.68 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:56 2006