Locus 1528

Sequence ID 3L_DroMel_CAF1
Location 4,416,874 – 4,416,994
Length 120
Max. P 0.645215
window2377

overview

Window 7

Location 4,416,874 – 4,416,994
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -23.33
Consensus MFE -20.53
Energy contribution -21.53
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.88
SVM decision value 0.23
SVM RNA-class probability 0.645215
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4416874 120 + 23771897
UAAUUAAUUCCAGUAAACAACAUGAUUGUUGAUUUCGUUUCGUCAUUGUGAUUAAGAUUUUAAAAAUAUCUAAAUAAAUUUGGUAAAUCUGUUUCACUUGAAAAGUCAGAAACAUGGAUA
........((((.....(((((....))))).....(((((.(((..((((...((((((...((((..........))))...))))))...)))).))).......))))).)))).. ( -23.40)
>DroSec_CAF1 946 120 + 1
UGAUUAAUUCCAGUAAACAACAUGAUUGUUGUUUUCGUAUCGCCAUUGUGAUUAAGAUUUUAAUAAUAUCUAAAUAAUUUUGGUAAAUCUCUUUCACUUAAAAAGUCAGAAACAUGGAUA
........(((((.((((((((....)))))))).)((.((((((..((.(((.((((.........)))).))).))..))))......((((.......))))...)).)).)))).. ( -20.40)
>DroSim_CAF1 959 117 + 1
UAAUUAAAUCCAGUAAACAACAUGAUUGUUGUUUUCGUUUCGCCAUUGUGAUUAAGAUUUUAAAAAUAUCUAAAUAAACUUGGUAAAUCUGUUUCACUUGAAAA---AGAAACAUGGAUA
.......((((((.((((((((....)))))))).)(((((((((.....(((.((((.........)))).))).....)))).......((((....)))).---.))))).))))). ( -26.20)
>consensus
UAAUUAAUUCCAGUAAACAACAUGAUUGUUGUUUUCGUUUCGCCAUUGUGAUUAAGAUUUUAAAAAUAUCUAAAUAAAUUUGGUAAAUCUGUUUCACUUGAAAAGUCAGAAACAUGGAUA
........(((((.((((((((....)))))))).)(((((......((((...((((((.........(((((....))))).))))))...))))...........))))).)))).. (-20.53 = -21.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:55 2006