Locus 1526

Sequence ID 3L_DroMel_CAF1
Location 4,414,965 – 4,415,075
Length 110
Max. P 0.924529
window2375

overview

Window 5

Location 4,414,965 – 4,415,075
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -31.74
Consensus MFE -28.93
Energy contribution -28.57
Covariance contribution -0.36
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.91
SVM decision value 1.16
SVM RNA-class probability 0.924529
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4414965 110 - 23771897
UUUUGUGUCAUAUUCUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAAGCGCUCUUCAUCUUCGGAUGCACUGACUAAAA-AACACAA-CG--------GAAA
............((((((..(((.(((.((.((....(((..((((....))))..))).)))).))))))..((((....))))............-......)-))--------))). ( -29.80)
>DroVir_CAF1 17750 116 - 1
UUUUGUGUCAUAUUUUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCGUCUUCGGAUGCACUGACUAAAGAAACACACGAAACGAAA----AA
((((((((......(..((((...))))..)((((...((..((((....))))..))((((((((((.....)))))..)).)))...........)))))))))))).....----.. ( -33.00)
>DroPse_CAF1 14698 118 - 1
UUUUGUGUCAUAUUCUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCAUCUUCGGAUGCACUGACUAAAAAAACACAA-AAACAAAAG-AGAA
((((((((........((.(((.......((((.....((..((((....))))..))((.....))))))..((((....))))..))))).......))))))-)).......-.... ( -31.96)
>DroWil_CAF1 30335 119 - 1
UUUUGUGUCAUAUUCUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCAUCUUCGGAUGCAUUGACUAAAAUUAACCGA-AAACGUAAUGGAAC
............(((((((((..(((...((((.....((..((((....))))..))((.....))))))..((((....)))).................)))-...))).)))))). ( -31.50)
>DroMoj_CAF1 15259 114 - 1
UUUUGUGUCAUAUUUUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCGUCUUCGGAUGCACUGACUAAAAAAACACA--AAACAGAA----GA
((((((((....((((.....((((....((((.....((..((((....))))..))((.....))))))..((((....))))....))))..)))))))))--))).....----.. ( -32.20)
>DroPer_CAF1 15257 118 - 1
UUUUGUGUCAUAUUCUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCAUCUUCGGAUGCACUGACUAAAAAAACACAA-AAACAAAAG-AGAA
((((((((........((.(((.......((((.....((..((((....))))..))((.....))))))..((((....))))..))))).......))))))-)).......-.... ( -31.96)
>consensus
UUUUGUGUCAUAUUCUGUACGGGUCGUAUGAGUUUAUUGUAGCCUCGAAAGAGGUCACGCACCAGGCGCUCUUCAUCUUCGGAUGCACUGACUAAAAAAACACAA_AAACAAAA____AA
(((((.((((..........(((.(((.((.((....(((..((((....))))..))).)))).))))))..((((....))))...)))))))))....................... (-28.93 = -28.57 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:53 2006