Locus 1525

Sequence ID 3L_DroMel_CAF1
Location 4,414,299 – 4,414,392
Length 93
Max. P 0.513545
window2374

overview

Window 4

Location 4,414,299 – 4,414,392
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 88.14
Mean single sequence MFE -33.19
Consensus MFE -27.19
Energy contribution -26.92
Covariance contribution -0.27
Combinations/Pair 1.24
Mean z-score -1.75
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.513545
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4414299 93 + 23771897
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU-GGAAGGACCUCUUCCCCUGUUCAUAGUUCUUGUUUAACGGAAGUGCCUCCCAUGCGG
.(((((((((.....((((((..(((((.(((((((-.....))))))).)))))...))))))....)))))((....)).......)))).. ( -32.70)
>DroSec_CAF1 12254 93 + 1
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU-GGAAGGACCUCUUUCCCUGCUCAUAGUUCUUGUUUAACGGAAGUGCCUUCCAUGCGG
.(((((((((.....((((((.(.((((.(((((((-.....)))))))..)))).).))))))....)))))).(((((...))))).))).. ( -34.90)
>DroSim_CAF1 12275 93 + 1
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU-GGAAGGACCUCUUUCCCUGCUCAUAAUUCUUGUUUAACGGAAGUGCCUUCCAUGCGG
.(((((((((.......((((.(.((((.(((((((-.....)))))))..)))).).))))......)))))).(((((...))))).))).. ( -30.22)
>DroEre_CAF1 12467 93 + 1
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU-GGAAAGACCUCUUCCCCUGCUCAUAGUUCUUGUUUAACGGAAGUGCCUCCCAUGCGG
.(((((((((.....((((((.((((((.(((((((-.....))))))).))))).).))))))....)))))((....)).......)))).. ( -33.50)
>DroYak_CAF1 12778 93 + 1
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU-GGAAGGACCUCUUCCCCUGCUCAUAGUUCUUGUUUAACGGAAGUGCCUCCCAUGCGG
.(((((((((.....((((((.((((((.(((((((-.....))))))).))))).).))))))....)))))((....)).......)))).. ( -33.00)
>DroAna_CAF1 14925 94 + 1
UGCAUUAAACCACCCACUGUGGGCGGGGCAAGGAGCAUCUGCCAUCUGUGUCCCCGCCCGUAGACCCUGUUUAAUGGAAGUGCCUCCCAUGCGG
.(((((((((......((((((((((((((.(((((....))..))).)).)))))))))))).....)))))))(((......)))...)).. ( -34.80)
>consensus
UGCAUUAAACCAUCCACUAUGUGGGGGGUGGGGGUU_GGAAGGACCUCUUCCCCUGCUCAUAGUUCUUGUUUAACGGAAGUGCCUCCCAUGCGG
.(((((((((.....((((((.(.((((.(((((((......)))))))..)))).).))))))....)))))((....)).......)))).. (-27.19 = -26.92 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:52 2006