Locus 1524

Sequence ID 3L_DroMel_CAF1
Location 4,413,171 – 4,413,286
Length 115
Max. P 0.628511
window2373

overview

Window 3

Location 4,413,171 – 4,413,286
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 95.76
Mean single sequence MFE -22.18
Consensus MFE -19.84
Energy contribution -20.28
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.19
SVM RNA-class probability 0.628511
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4413171 115 - 23771897
AGAGGGGACUCUGGAGAAAUGUUAAUAAUUACAAAAGCGAUUAUAGCUGGGGAAUAUUAUAUAUUGUUUGUAAAAUAUUCAUAGAGUAAAACAAGUAUGCAGGUGUACUGGGCGU
((((....))))......(((((.....((((...(((.......)))...(((((((.((((.....)))).))))))).....))))....((((((....)))))).))))) ( -22.80)
>DroSec_CAF1 11117 112 - 1
AGAGGGGACUCUGGAGAAAGGUUA---AUUACAAAAGCGAUUAUAGCUGGGGAAUAUUAUAUAUUGUUUGUAAAAUAUUCAUAGAGUAAGACAAGUAUGCAGGUGUACUGGACGU
((((....))))........(((.---.((((...(((.......)))...(((((((.((((.....)))).))))))).....))))....((((((....)))))).))).. ( -22.40)
>DroSim_CAF1 11137 112 - 1
AGAGGGGACUCUGGAGAAAGGUUA---AUUACAAAAGCGAUUAUAGCUGGGGAAUAUUAUAUAUUGUUUGUAAAAUAUUCAUAGAGUAAGACAAGUAUGCAGGUGUACUGGACGU
((((....))))........(((.---.((((...(((.......)))...(((((((.((((.....)))).))))))).....))))....((((((....)))))).))).. ( -22.40)
>DroEre_CAF1 11323 112 - 1
AGAGGGGACUCUGGAGAAAGGUUA---AUUACAAAAGCGAUUAUAGCCGGGCAAUAUUAUAUAUUGUUUGUAAAAUAUUCAUAGAGUAAGACAAGUAUGCAGGUGUACUGGACGA
((((....))))........(((.---..((((...(((........((((((((((...)))))))))).....(((((...))))).........)))...))))...))).. ( -21.00)
>DroYak_CAF1 11619 112 - 1
AGAGGGGACUCUGGAGAAAGGUUA---AUUACAAAAGCGAUUAUAGCUAGGGAAUAUUAUAAAUUGCUUGUAAAAUAUUCAUAGAGUAAGACAAGUAUGCAGGUGUACUGGACGU
((((....))))........(((.---..((((...(((.((((((.((.....))))))))..(((((((....(((((...)))))..))))))))))...))))...))).. ( -22.30)
>consensus
AGAGGGGACUCUGGAGAAAGGUUA___AUUACAAAAGCGAUUAUAGCUGGGGAAUAUUAUAUAUUGUUUGUAAAAUAUUCAUAGAGUAAGACAAGUAUGCAGGUGUACUGGACGU
((((....))))........(((.....((((...(((.......)))...(((((((.((((.....)))).))))))).....))))....((((((....)))))).))).. (-19.84 = -20.28 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:51 2006