Locus 1521

Sequence ID 3L_DroMel_CAF1
Location 4,402,200 – 4,402,291
Length 91
Max. P 0.508066
window2368

overview

Window 8

Location 4,402,200 – 4,402,291
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -27.93
Consensus MFE -23.07
Energy contribution -23.43
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.02
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.508066
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4402200 91 + 23771897
GCUUCGAUAGCCAUGCGGCCGUACAGUUGAAGCAGCAGACGCUGGCUCGUCAGAGUCAGAAGGUAAGGAUUAC--------ACAUAUUACACAAUGGUA
((((((((.(((....)))......)))))))).((.....(((((((....)))))))...))......(((--------.(((........)))))) ( -23.80)
>DroSec_CAF1 182 89 + 1
GCUUCGAUAGCCAUGCGGCCGUACAGUUGAAGCAGCAGACGCUGGCUCGUCAGAGCCAGAAGGUAAGGAUUAC--------ACGUAGUA--CAAUGGUA
((((((((.(((....)))......)))))))).....((((((((((....)))))))...(((.....)))--------.)))....--........ ( -26.50)
>DroSim_CAF1 182 89 + 1
GCUUCGAUAGCCAUGCGGCCGUACAGUUGAAGCAGCAGACGCUGGCUCGUCAGAGCCAGAAGGUAAGGAUUAC--------ACGUAGUA--CAAUGGUA
((((((((.(((....)))......)))))))).....((((((((((....)))))))...(((.....)))--------.)))....--........ ( -26.50)
>DroEre_CAF1 179 91 + 1
GCUUCGAUCGCCAUGCGGCCGCCCAGUUGAAGCAGCAGACACUGGCUCGUCAGAGCCAGAAGGUAAGGACUCU--------AUUUAGUGGCGAGUGUGC
((..((.(((((((..((((..((.((((...)))).....(((((((....)))))))..))...)).))..--------.....))))))).)).)) ( -31.10)
>DroYak_CAF1 182 87 + 1
GCUUCGAUCGCCAUGCGGCUGCCCAGCUGAAGCAGCAGACGCUGGCUCGUCAGAGCCAGAAGGUAAGGAUUAU--------CUAUAGUUU----UUCUC
((((((..(((...)))(((....)))))))))...((((.(((((((....))))))).(((((.....)))--------))...))))----..... ( -27.60)
>DroAna_CAF1 173 97 + 1
GCUGCGAUCGCCAUGCGGCCGCUCAGCUGAAGCAGCAAACUCUGGCUCGUCAGAGCCAGAAGGUAAGGACAUUUUAAUCCUUCGAAUAA--AAAUAAGA
(((((..((((...((....))...)).)).)))))....((((((((....))))))))..(.(((((........))))))......--........ ( -32.10)
>consensus
GCUUCGAUAGCCAUGCGGCCGCACAGUUGAAGCAGCAGACGCUGGCUCGUCAGAGCCAGAAGGUAAGGAUUAC________ACGUAGUA__CAAUGGUA
((((((((.(((....)))......)))))))).((.....(((((((....)))))))...))................................... (-23.07 = -23.43 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:46 2006