Locus 152

Sequence ID 3L_DroMel_CAF1
Location 480,938 – 481,040
Length 102
Max. P 0.579273
window218

overview

Window 8

Location 480,938 – 481,040
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 80.53
Mean single sequence MFE -15.12
Consensus MFE -8.40
Energy contribution -8.56
Covariance contribution 0.16
Combinations/Pair 1.50
Mean z-score -1.89
Structure conservation index 0.56
SVM decision value 0.09
SVM RNA-class probability 0.579273
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 480938 102 - 23771897
CUUAAAUAUUCC-CAGAAGAGGCCAUUUCAAGUCACUAGCAAUUUGACUUUGCCUUUUUCUUUUAUUCUCUGCCUUCCAUCUUCACUAUGACUAUCUCAUCAU
............-..((((((((.(..((((((........))))))..).))))))))............................................ ( -12.30)
>DroSec_CAF1 61682 102 - 1
CUUAAAUAUUCC-CAGAAGAGGCUUUUUCAAGUCACUAGCAAUUUGACUUUGCCUUUUUCUUUGAUUCUCUGCCUUUCUUCUCCACUAUGACUAUCUCAUCAU
............-.(((((((((....(((((......((((.......)))).......)))))......)))..))))))..................... ( -14.02)
>DroSim_CAF1 62415 101 - 1
CUUAAAUAUUCCCCAGAAGAGGGAA--GAGGGUCACUAGCAAUUUGACUUUGCCUUUUUCUUUGAUUCUCUGCCUUUCUUCUCCACUAUGACUAUCUCAUCAU
..............(((((((((.(--((((((((...((((.......)))).........)))))))))..)))))))))..................... ( -21.30)
>DroEre_CAF1 63862 94 - 1
CUCAAAUAUUCG-CAGAAGAGGCUCUUUCGAAACACUAGCAAUUCGACUCUGUCUCGU----UUAUUCUCUGCUU--UUUCUCCACUAUGACUAU--CAUCAU
...........(-((((.(((((....(((((..........)))))....)))))(.----.....))))))..--..................--...... ( -14.90)
>DroYak_CAF1 64734 100 - 1
CUCAAAUAUUCC-GAUAAGAGGCUCUUUCAAAACACCAGCAAUUUGACUCUGUUUCUUUCCCUUAUUCCCCGCCUGUCUUCUCCACCAUGACUAG--CAUCAU
............-((((((((((....(((((..........)))))....))))))).............((..(((...........)))..)--)))).. ( -13.10)
>consensus
CUUAAAUAUUCC_CAGAAGAGGCUAUUUCAAGUCACUAGCAAUUUGACUUUGCCUUUUUCUUUUAUUCUCUGCCUUUCUUCUCCACUAUGACUAUCUCAUCAU
...............((((((((....((((((........))))))....))))))))............................................ ( -8.40 =  -8.56 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:57 2006