Locus 1518

Sequence ID 3L_DroMel_CAF1
Location 4,397,860 – 4,397,953
Length 93
Max. P 0.939760
window2361

overview

Window 1

Location 4,397,860 – 4,397,953
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 94.65
Mean single sequence MFE -25.10
Consensus MFE -20.76
Energy contribution -21.40
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.83
SVM decision value 1.28
SVM RNA-class probability 0.939760
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4397860 93 + 23771897
GGCUCUUUGUUUGAAAUACAUGCCGAGGUAUAAAUAAGUUCGU-UAGAGAUGUUUGGACUUAAUGGUCCAGAUAUUCCUGUUCUGUGAAAGCCC
((((.((..(..(((....((((....))))............-(((..(((((((((((....)))))))))))..)))))).)..)))))). ( -26.80)
>DroSec_CAF1 47814 93 + 1
GGCUCUUUGUUUGAAAUACUUGUCGAGGUAUAAAUAAAUUCGU-UAAAGAUGUUUCGACUUAAUGGUCCAGAUAUUCCAGUUCUGUGAAAGCCC
((((......(((((((((((..((((...........)))).-..))).))))))))........((((((.........)))).)).)))). ( -18.00)
>DroSim_CAF1 48733 93 + 1
GGCUCUUUGUUUGAAAUACUUGUCGAGGUAUAAAUAAAUUCGU-UAGAGAUGUUUGGACUUAAUGGUCCAGAUAUUCCAGUUCUGUGCAAGCCC
((((...(((..(((((((((....))))))............-..(..(((((((((((....)))))))))))..)..)))...))))))). ( -26.10)
>DroEre_CAF1 49841 93 + 1
GGCUCUUUGUUUGAAAUACUUGUCGAGGUAUAAAUAAAUUCGG-UAGAGAUGUUUGGACUUAAUGGUCCAGAUAUUCCAGUUCCGUGAAAGCCC
((((.(((((((...((((((....)))))))))))))..(((-..(..(((((((((((....)))))))))))..)....)))....)))). ( -27.10)
>DroYak_CAF1 50882 94 + 1
GGCUCUUUGUUUGAAACACUUGUCGAGGUAUAAAUAAAUUCGGUUAGAGAUGUUUGGACUUAAUGGUCCAGAUAUUCCAGUUCUGCGAAAGCCC
((((.(((((..(((...((..(((((...........)))))..)).((((((((((((....))))))))))))....))).))))))))). ( -27.50)
>consensus
GGCUCUUUGUUUGAAAUACUUGUCGAGGUAUAAAUAAAUUCGU_UAGAGAUGUUUGGACUUAAUGGUCCAGAUAUUCCAGUUCUGUGAAAGCCC
((((.((((((((...(((((....)))))))))))))........(..(((((((((((....)))))))))))..)...........)))). (-20.76 = -21.40 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:40 2006