Locus 1513

Sequence ID 3L_DroMel_CAF1
Location 4,346,582 – 4,346,689
Length 107
Max. P 0.537474
window2354

overview

Window 4

Location 4,346,582 – 4,346,689
Length 107
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 97.52
Mean single sequence MFE -27.67
Consensus MFE -27.55
Energy contribution -27.33
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.36
Structure conservation index 1.00
SVM decision value 0.01
SVM RNA-class probability 0.537474
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4346582 107 - 23771897
CACACUGUGUAUUGAUGCCGAAGUGAAAA-AACGAGCGGAAAGUUGCGAGCGGAUAAAAUUGUUUUUUCGCACGCCAAAAAGGAGAAACAAAUGCUUGCGUUGUGUGA
(((((........(((.(((..((.....-.))...)))...)))(((((((.......((((((((((............)))))))))).)))))))...))))). ( -28.30)
>DroSim_CAF1 31794 107 - 1
CACACUGUGUUUUGAUGCCGAAGUGAAAA-AACGAGCGGAAAGUUGCGAGCGGAUAAAAUUGUUUUUUCGCACGCCAAAAAGGAGAAACAAAUGCUUGCGUUGUGUGA
(((((........(((.(((..((.....-.))...)))...)))(((((((.......((((((((((............)))))))))).)))))))...))))). ( -28.30)
>DroYak_CAF1 31682 108 - 1
CACACUGUGUUUUGAUGCCGAAGUGAAAAGAGCGAACGGAAAGUUGCGAGCGGAUAAAAUUGUUUUUUCGCACGCCAAAAAGGAGAAACAAAUGCUUGCGUUGUGUGA
(((((........(((.(((..((.......))...)))...)))(((((((.......((((((((((............)))))))))).)))))))...))))). ( -26.40)
>consensus
CACACUGUGUUUUGAUGCCGAAGUGAAAA_AACGAGCGGAAAGUUGCGAGCGGAUAAAAUUGUUUUUUCGCACGCCAAAAAGGAGAAACAAAUGCUUGCGUUGUGUGA
(((((........(((.(((..((.......))...)))...)))(((((((.......((((((((((............)))))))))).)))))))...))))). (-27.55 = -27.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:33 2006