| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,344,248 – 4,344,367 |
| Length | 119 |
| Max. P | 0.880053 |
| Location | 4,344,248 – 4,344,367 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -13.11 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4344248 119 - 23771897 AUUAAACUUCUCAAAUAUUUUACAACUACCAGAAAAUAAGCUCGAAAUUCCGGUUUUUUAAAACCAACUGACACAUUGUUCCUGUCAGAAAACCCUACAUUUUCUAAUUGGAUACCCAA ..............................(((((((..............(((((....)))))..((((((.........))))))..........)))))))..((((....)))) ( -17.00) >DroSim_CAF1 30420 96 - 1 ---------------------AGAACUACCAGAAAAUAAGCUCGAAAUUCCGGUU--UUGAAACCAACUGACACAUUCUUCCUGUCAGAAAACCCUACAUUUUCUAAUUGGAUACCCAA ---------------------.........(((((((....(((((((....)))--))))......((((((.........))))))..........)))))))..((((....)))) ( -16.70) >DroYak_CAF1 30146 104 - 1 AU-------------UAUUUUCCAACUACCAGAGAUUAAGCUCGAAAUUCCGGUU--UUGAAACAAGCUGGCACUUGGUUCCUGUCAGAAAACCCUACAUUUUCUAAUUGGAUACCCAA ..-------------.....(((((....(((..((((((.........((((((--(......)))))))..))))))..)))..((((((.......))))))..)))))....... ( -18.50) >consensus AU_____________UAUUUUACAACUACCAGAAAAUAAGCUCGAAAUUCCGGUU__UUGAAACCAACUGACACAUUGUUCCUGUCAGAAAACCCUACAUUUUCUAAUUGGAUACCCAA ..............................(((((((.(((.((......)))))............((((((.........))))))..........)))))))..((((....)))) (-13.11 = -13.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:32 2006