Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,343,630 – 4,343,729 |
Length | 99 |
Max. P | 0.614272 |
Location | 4,343,630 – 4,343,729 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -26.14 |
Energy contribution | -26.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4343630 99 + 23771897 UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAGAGCGUCAGAAAAAAAACAGCUGUGAGCCGGAGAAUGCCCAUAGACAG ...(((((....((((((....))))))(((.......))).........)))))...............((((((.((........)).))))).).. ( -24.90) >DroSim_CAF1 29824 96 + 1 UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCUAAACGAAACAUGAAAAGAGCGUCAGAA---AAACAGCUGUGAGGCGUAGAAUGCCCAUAGACAG ...(((((....((((((....))))))(((.......))).........))))).......---.....((((((.(((((...)))))))))).).. ( -29.40) >DroYak_CAF1 29549 98 + 1 UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAAAGCGUCGGUAA-AAAACAGCUGUGUGGCGGAGAAUGCUCAUAGACAG ...(((((....((((((....))))))(((.......))).........)))))((((((..-......))).(((((((.....))).))))))).. ( -26.90) >consensus UAAGCUUUAGCUGGGCGUGUCAACGCCCUCGGCCCAAACGAAACAUGAAAAGAGCGUCAGAAA_AAAACAGCUGUGAGGCGGAGAAUGCCCAUAGACAG ...(((((....((((((....))))))(((.......))).........)))))...............((((((.((((.....))))))))).).. (-26.14 = -26.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:31 2006