| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,343,257 – 4,343,369 |
| Length | 112 |
| Max. P | 0.900346 |
| Location | 4,343,257 – 4,343,369 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 94.63 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -30.67 |
| Energy contribution | -30.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.900346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4343257 112 + 23771897 GCACAAAGUGCCAGCAAAACAGAUUGCAAAACGAUGUCUAGACGUGCAAUUUUGGUCCUGACAUCGGGGCACCUCCUCUUCAUUCGAGGCGAAUUUUCCGCUUACACACACA ((.....(((((.((((......))))....(((((((..(((...........)))..))))))).)))))(.((((.......)))).)........))........... ( -32.70) >DroSim_CAF1 29448 111 + 1 GCAUAAAGUGCCAGCAA-ACAGAUUGCAAAACGAUGUCUAGACGUGCAAUUUUGGUCCUGACAUCGGGGCACCUCCUCUUCAUUCGAGGCGAAUUUUCCGCUCACACACACA ((.....(((((.((((-.....))))....(((((((..(((...........)))..))))))).)))))(.((((.......)))).)........))........... ( -32.50) >DroYak_CAF1 29176 111 + 1 GUACAAUGUGCCAGCUA-ACAGAUUGCAAAACGAUGUCUAGACUUGCAAUUUUGGUCCUGACAUCGGGGCGCCUCCUCUUCAGUCGAGGCGAAUUUUCCGCUCACACACACA ......((((..(((..-.......((....(((((((..((((.........))))..)))))))..))(((((..(....)..))))).........)))..)))).... ( -34.30) >consensus GCACAAAGUGCCAGCAA_ACAGAUUGCAAAACGAUGUCUAGACGUGCAAUUUUGGUCCUGACAUCGGGGCACCUCCUCUUCAUUCGAGGCGAAUUUUCCGCUCACACACACA ((.....(((((.((((......))))....(((((((..(((...........)))..))))))).)))))(.((((.......)))).)........))........... (-30.67 = -30.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:30 2006