Locus 151

Sequence ID 3L_DroMel_CAF1
Location 466,231 – 466,321
Length 90
Max. P 0.790535
window217

overview

Window 7

Location 466,231 – 466,321
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 80.37
Mean single sequence MFE -35.70
Consensus MFE -22.34
Energy contribution -22.93
Covariance contribution 0.59
Combinations/Pair 1.24
Mean z-score -1.97
Structure conservation index 0.63
SVM decision value 0.59
SVM RNA-class probability 0.790535
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 466231 90 - 23771897
GCUGGGGG--CUCGGGGAUUUUGGGGCUUCGAGUCCGGAGCUGGGGCUUCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
......((--((((((((..(((..(((((.((..((.(((.((((......)))).))).))..)))))....)).)))..)))))))))) ( -37.10)
>DroSec_CAF1 47101 90 - 1
GCUGGAGG--CUCGGGGAUCUUGGGGCUUCGAGUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
.(..((((--(..((((((....((((.....))))(((((....))))))))))).))((((((......))))))......)))..)... ( -37.20)
>DroSim_CAF1 47767 90 - 1
GCUGGGGG--CUCGGGGAUCUUGGGGCUCCGAGUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
(((.((((--...((((((...((((((((.(((.....)))))))))))))))))...((((((......))))))......)))).))). ( -38.70)
>DroEre_CAF1 49190 90 - 1
GCUGGGGG--CUCGGGGAUUUUGGGGGUUCGACUCCGGAGCUGGGGCUGCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
......((--((((((((..(((.(((((((.(((.(.(((.((((......)))).))).)))).)))))))....)))..)))))))))) ( -36.40)
>DroYak_CAF1 48988 92 - 1
GCUGGGGGCGCUCGGGGAUUUUGGGGUUUCAACUCUGGAGUUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
(((.((((.((..((((((...(((((..(((((....)))))..))))))))))).))((((((......))))))......)))).))). ( -41.50)
>DroAna_CAF1 21632 79 - 1
AUUC------------AAUCUUG-GGCUAUGGCUCUCAAGCCAUCGCUCUCACGACUGCUGGGAGCCACGAUUAGCAUAAUUUCUCCCGUCU
....------------.......-.(((((((((((((.((..(((......)))..)))))))))))....))))................ ( -23.30)
>consensus
GCUGGGGG__CUCGGGGAUCUUGGGGCUUCGACUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU
..........((((((((..(((((((.....))))(.(((.((((......)))).))).)..((........)).)))..)))))))).. (-22.34 = -22.93 +   0.59) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:56 2006