Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 466,231 – 466,321 |
Length | 90 |
Max. P | 0.790535 |
Location | 466,231 – 466,321 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -22.34 |
Energy contribution | -22.93 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.24 |
Mean z-score | -1.97 |
Structure conservation index | 0.63 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 466231 90 - 23771897 GCUGGGGG--CUCGGGGAUUUUGGGGCUUCGAGUCCGGAGCUGGGGCUUCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU ......((--((((((((..(((..(((((.((..((.(((.((((......)))).))).))..)))))....)).)))..)))))))))) ( -37.10) >DroSec_CAF1 47101 90 - 1 GCUGGAGG--CUCGGGGAUCUUGGGGCUUCGAGUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU .(..((((--(..((((((....((((.....))))(((((....))))))))))).))((((((......))))))......)))..)... ( -37.20) >DroSim_CAF1 47767 90 - 1 GCUGGGGG--CUCGGGGAUCUUGGGGCUCCGAGUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU (((.((((--...((((((...((((((((.(((.....)))))))))))))))))...((((((......))))))......)))).))). ( -38.70) >DroEre_CAF1 49190 90 - 1 GCUGGGGG--CUCGGGGAUUUUGGGGGUUCGACUCCGGAGCUGGGGCUGCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU ......((--((((((((..(((.(((((((.(((.(.(((.((((......)))).))).)))).)))))))....)))..)))))))))) ( -36.40) >DroYak_CAF1 48988 92 - 1 GCUGGGGGCGCUCGGGGAUUUUGGGGUUUCAACUCUGGAGUUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU (((.((((.((..((((((...(((((..(((((....)))))..))))))))))).))((((((......))))))......)))).))). ( -41.50) >DroAna_CAF1 21632 79 - 1 AUUC------------AAUCUUG-GGCUAUGGCUCUCAAGCCAUCGCUCUCACGACUGCUGGGAGCCACGAUUAGCAUAAUUUCUCCCGUCU ....------------.......-.(((((((((((((.((..(((......)))..)))))))))))....))))................ ( -23.30) >consensus GCUGGGGG__CUCGGGGAUCUUGGGGCUUCGACUCCGGAGCUGGGGCUCCGUCCCCUGCUGCGAGCUGAAUUUUGCAUAAUUUCUCUGGGCU ..........((((((((..(((((((.....))))(.(((.((((......)))).))).)..((........)).)))..)))))))).. (-22.34 = -22.93 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:56 2006