| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,342,324 – 4,342,442 |
| Length | 118 |
| Max. P | 0.839800 |
| Location | 4,342,324 – 4,342,442 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.55 |
| Mean single sequence MFE | -33.37 |
| Consensus MFE | -26.79 |
| Energy contribution | -27.45 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4342324 118 - 23771897 GGCCUGGCUAAUAACUGCGGCGAUCGAGCGCGUGGCUAAGCGGGUCAAUUGUGGGGCCAGAA--AAAGCCAACAAGCGCCAGUCGUCGUCGGGUAAUACGAAAAAAUGGGUGAAAAAAAA .(((((((........))((((((.(.((((.(((((...(.((((........)))).)..--..)))))....))))).))))))..))))).......................... ( -37.50) >DroSim_CAF1 28569 94 - 1 GGCCUGGCUAAUAACUGCGGCGAUCGAGCGCGUGGCUAAGCGGGUCAAUUGUGGGGCCAGAAAAAAAGCCAACAAGCGCCAGUCG--------------------------GGAAAAAAA ..(((((((........((.....)).((((.(((((.....((((........))))........)))))....)))).)))))--------------------------))....... ( -27.92) >DroYak_CAF1 28262 100 - 1 G-----GCUAAUAACUGCGGCGAUCGAGCGCGUGGCUAAGCGGGUCAAUUGUGGGGCCAGAA--GAAGCCAACAAGCGCCAGUCGUCGUCGUC-------------GGGGGGGAAAAAAA .-----.((..(.((.((((((((.(.((((.(((((...(.((((........)))).)..--..)))))....))))).)))))))).)).-------------)..))......... ( -34.70) >consensus GGCCUGGCUAAUAACUGCGGCGAUCGAGCGCGUGGCUAAGCGGGUCAAUUGUGGGGCCAGAA__AAAGCCAACAAGCGCCAGUCGUCGUCG________________GGG_GGAAAAAAA ......((........))((((((.(.((((.(((((.....((((........))))........)))))....))))).))))))................................. (-26.79 = -27.45 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:28 2006