Locus 1505

Sequence ID 3L_DroMel_CAF1
Location 4,337,608 – 4,337,709
Length 101
Max. P 0.732892
window2343

overview

Window 3

Location 4,337,608 – 4,337,709
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.15
Mean single sequence MFE -30.60
Consensus MFE -20.26
Energy contribution -20.18
Covariance contribution -0.08
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.66
SVM decision value 0.43
SVM RNA-class probability 0.732892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4337608 101 - 23771897
UGAUA-AAGAGACGCUUUUUCUUUUGAGUCACCCACUUCCUCCGACUGACUCACCC----GCAAGGGGGUGGCCUUGCCGCCUCC-----UGAUUCCG-------CUGUUG--CUUCCAC
.....-(((..((((.........(((((((..(.........)..)))))))...----...((((((((((...)))))))))-----)......)-------).))..--))).... ( -29.10)
>DroSec_CAF1 23849 103 - 1
UGAUAAAAGAGACGCUU-UUCUUUUGAGUCACCCACUUCCUCCGACUGACUCACCC----GAAAGGGGGUGGCCUUGCCGCCUCC-----UGAUUCCG-------CUGUUGCGCUUCCAC
....((((((((....)-)))))))((((((..(.........)..))))))....----...((((((((((...)))))))))-----)((...((-------(....)))..))... ( -31.40)
>DroSim_CAF1 23895 103 - 1
UGAUAAAAGAGAAGCUU-UUCUUUUGAGUCACCCACUUCCUCCGACUGACUCACCC----GAAAGGGGGUGGCCUUGCCGCCUCC-----UGAUUCCG-------CUGUUGCGCUUCCAC
........(.(((((..-(((...(((((((..(.........)..)))))))...----)))((((((((((...)))))))))-----)......(-------(....)))))))).. ( -34.20)
>DroYak_CAF1 23370 100 - 1
UGAUA-AAGAGACGCUU-UUCUUUUGAGUCACCCACUUCCUCUGACUGACUCAACC----GAAAGGGGGUGGCAUUGCCGCCUCC-----UGAUUCCA-------CUGUUG--CUUCCAC
.....-..(.((.((..-(((..((((((((..((.......))..))))))))..----)))((((((((((...)))))))))-----).......-------.....)--).))).. ( -31.50)
>DroAna_CAF1 27064 117 - 1
UGAUA-AAAAGCUCCUU-UCCUCUUGAGUCACCCAGUUCGUGCCACUGACUCAUCUCUUUGGGGGGAGAUGGCUUCGCUUCCUUCCCCUUUUUUUCCGCCCGGCUCUGUUGCG-UUCCAC
.....-....((..(..-.((...(((((((....((....))...))))))).......((((((((..(((...)))..))))))))............))....)..)).-...... ( -26.80)
>consensus
UGAUA_AAGAGACGCUU_UUCUUUUGAGUCACCCACUUCCUCCGACUGACUCACCC____GAAAGGGGGUGGCCUUGCCGCCUCC_____UGAUUCCG_______CUGUUGCGCUUCCAC
........................(((((((...............)))))))...........(((((((((...)))))))))................................... (-20.26 = -20.18 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:23 2006