Locus 1502

Sequence ID 3L_DroMel_CAF1
Location 4,335,480 – 4,335,586
Length 106
Max. P 0.611171
window2337

overview

Window 7

Location 4,335,480 – 4,335,586
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.97
Mean single sequence MFE -22.18
Consensus MFE -9.34
Energy contribution -9.98
Covariance contribution 0.64
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.42
SVM decision value 0.16
SVM RNA-class probability 0.611171
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4335480 106 + 23771897
CCCCCGCCCCUUCUUGCCACUAG----------CU--GCUCCACUUGCAACCGAGCAGCGC--GAAACUUUUAUGCCUUCUUCGUCGCCAUCUGCAGCUCCCACUGGCAUACCUUAUAAC
..............(((((..((----------((--((......(((......)))((((--(((..............)))).))).....)))))).....)))))........... ( -23.64)
>DroSec_CAF1 21893 107 + 1
-CCCCUCCCCUUCUUGCAACUCU----------CU--GCUCCACUUGCAACCGAGCAGCGUGUGCAACUUUUAUGCCUUCUUCGUCGCCAUCUGCAGCUCCCACUGGCAUACCUUAUGCC
-............(((((...(.----------((--((((...........)))))).)..)))))....((((((......((.((.....)).)).......))))))......... ( -22.62)
>DroSim_CAF1 21864 107 + 1
-CCCCUACCCUUCUUGCAACUCU----------CU--GCUCCACUUGCAACCGAGCAGCGUGUGCAACUUUUAUGCCUUCUUCGUCGCCAUCUGCAGCUCCCACUGGCAUACCUUAUGCC
-............(((((...(.----------((--((((...........)))))).)..)))))....((((((......((.((.....)).)).......))))))......... ( -22.62)
>DroYak_CAF1 21217 102 + 1
CCCCC------GGUUGCACUUCU----------CUGCGCUCCACUUGCAACCGAGCAGCGC--GCAACUUUUAUGCCUUCUUUGUCGCCAUCUGCAGCUCCCACUGGCAUACCUUGUACC
.....------(((.(((.....----------.(((((.(..((((....))))..).))--))).....((((((......((.((.....)).)).......))))))...)))))) ( -23.32)
>DroAna_CAF1 21522 106 + 1
CCACCCUGCCACCCUGCCACCCUCUUUCCUUGCUU--GCUCCACUUGCAACCAAGCUGCGU--GCAACUUUUAUGCCUUCGGCCUCGCCAUCUGCAG----------CAUACCUAAUACC
.............................(((.((--((.......)))).)))((((((.--(((.......))))...(((...)))....))))----------)............ ( -18.70)
>consensus
CCCCCUCCCCUUCUUGCAACUCU__________CU__GCUCCACUUGCAACCGAGCAGCGU__GCAACUUUUAUGCCUUCUUCGUCGCCAUCUGCAGCUCCCACUGGCAUACCUUAUACC
.....................................(((...((((....)))).)))............((((((......((.((.....)).)).......))))))......... ( -9.34 =  -9.98 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:18 2006