Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 465,917 – 466,055 |
Length | 138 |
Max. P | 0.546336 |
Location | 465,917 – 466,021 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 87.19 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -22.60 |
Energy contribution | -23.36 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.14 |
Mean z-score | -1.58 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 465917 104 - 23771897 ---GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAGCAACUUGGAGUCAUUGGUAUCGCUGCAUUCAAAUCACCAG ---((((.-------.((.(((((((((....)))))))))))..((.((.(((((((((((..........)))))).((....))...))))))).)).......))))... ( -30.60) >DroSec_CAF1 46787 104 - 1 ---GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAGCAACUUGGAGUCAUUGGUAUCGCUGCAUUCAAAUCACCAG ---((((.-------.((.(((((((((....)))))))))))..((.((.(((((((((((..........)))))).((....))...))))))).)).......))))... ( -30.60) >DroSim_CAF1 47453 104 - 1 ---GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAGCAACUUGGAGUCAUUGGUAUCGCUGCAUUCAAAUCACCAG ---((((.-------.((.(((((((((....)))))))))))..((.((.(((((((((((..........)))))).((....))...))))))).)).......))))... ( -30.60) >DroEre_CAF1 48861 112 - 1 CCAGUGGCCAGUGGUCAGUCGCAGAUGCAUUUGUAUCUACGCCGAGCUGCAGAUACAUA-UUUAAAUUAUAGAGCAG-UUGCAGUCAUUGGUAUCGCUGCAUUCAAAUCACUAU .((((((((((((.((.(.((.((((((....)))))).))).))(((((((.....((-(.......)))......-))))))))))))))..)))))............... ( -30.70) >DroYak_CAF1 48653 111 - 1 ---GUGGCCAGUGGUCAGUCGCAGAUACAUUUGUAUCUACGCCGAGCUGCAGAUACAUAGUUCAAAUUAUAGAGCAACUUGCACAUGCUGGUAUCGCUGCAUUCAAAUCACCAG ---(..((..(..((..(.((.((((((....)))))).)).)..))..).(((((...((((........)))).....((....))..)))))))..).............. ( -30.50) >consensus ___GUGGC_______CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAGCAACUUGGAGUCAUUGGUAUCGCUGCAUUCAAAUCACCAG ...(..((.......(((((((((((((....)))))))))....))))..(((((((((((..........)))))).((....))...)))))))..).............. (-22.60 = -23.36 + 0.76)
Location | 465,957 – 466,055 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.12 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -24.18 |
Energy contribution | -24.42 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 465957 98 - 23771897 GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCA-------GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAG ((((((((((...((.....)).....))))...-------(..((-------.((.(((((((((....)))))))))))..))..))))))).................. ( -30.70) >DroSec_CAF1 46827 98 - 1 GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCA-------GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAG ((((((((((...((.....)).....))))...-------(..((-------.((.(((((((((....)))))))))))..))..))))))).................. ( -30.70) >DroSim_CAF1 47493 98 - 1 GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCA-------GUGGC-------CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAG ((((((((((...((.....)).....))))...-------(..((-------.((.(((((((((....)))))))))))..))..))))))).................. ( -30.70) >DroEre_CAF1 48900 111 - 1 GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCAGUAGCCAGUGGCCAGUGGUCAGUCGCAGAUGCAUUUGUAUCUACGCCGAGCUGCAGAUACAUA-UUUAAAUUAUAGAG ((((((((((...((.....)).....))))...(((((...((((..((((....))))((((((....))))))..)))).)))))))))))...-.............. ( -30.30) >DroYak_CAF1 48693 105 - 1 GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCA-------GUGGCCAGUGGUCAGUCGCAGAUACAUUUGUAUCUACGCCGAGCUGCAGAUACAUAGUUCAAAUUAUAGAG ((((((((((...((.....)).....)))).((-------(((((..((((....))))((((((....))))))..)))..)))).)))))).................. ( -24.40) >consensus GUAUUUGGUGUUACCUAAGUGGAUUUUCGCCCCA_______GUGGC_______CAGUCGCAGAUGCAUUUGUAUCUGCGCUAAGCUGCAGAUACGUUGUUAAAAUUAUAGAG (((((((..(((((.....(((.........))).......))))).......(((((((((((((....)))))))))....))))))))))).................. (-24.18 = -24.42 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:55 2006