Locus 15

Sequence ID 3L_DroMel_CAF1
Location 50,081 – 50,200
Length 119
Max. P 0.785084
window19

overview

Window 9

Location 50,081 – 50,200
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 98.88
Mean single sequence MFE -38.10
Consensus MFE -38.10
Energy contribution -38.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 1.00
SVM decision value 0.57
SVM RNA-class probability 0.785084
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 50081 119 - 23771897
UCGAACAUUAGAGGCUCAUCAAUACGGUGAACGAUCUCGAAGAGGAACUUCUGCUUCUCCAGGAAGUUCUUGUCGGCGAUCUUUACCUUCUGCGUGGGCACGCUAAAGGCAGUCACACA
..((.(.((((..((((((......((((((.((((((((..((((((((((.........)))))))))).)))).))))))))))......))))))...)))).)....))..... ( -38.10)
>DroSec_CAF1 40263 119 - 1
UCGAACAUUAGAGGCUCAUCAACACGGUGAACGAUCUCGAAGAGGAACUUCUGCUUUUCCAGGAAGUUCUUGUCGGCGAUCUUUACCUUCUGCGUGGGCACGCUAAAGGCAGUCACACA
..((.(.((((..((((((......((((((.((((((((..((((((((((.........)))))))))).)))).))))))))))......))))))...)))).)....))..... ( -38.10)
>DroSim_CAF1 41613 119 - 1
UCGAACAUUAGAGGCUCAUCAACACGGUGAACGAUCUCGAAGAGGAACUUCUGCUUUUCCAGGAAGUUCUUGUCGGCGAUCUUUACCUUCUGCGUGGGCACGCUAAAGGCAGUCACACA
..((.(.((((..((((((......((((((.((((((((..((((((((((.........)))))))))).)))).))))))))))......))))))...)))).)....))..... ( -38.10)
>consensus
UCGAACAUUAGAGGCUCAUCAACACGGUGAACGAUCUCGAAGAGGAACUUCUGCUUUUCCAGGAAGUUCUUGUCGGCGAUCUUUACCUUCUGCGUGGGCACGCUAAAGGCAGUCACACA
..((.(.((((..((((((......((((((.((((((((..((((((((((.........)))))))))).)))).))))))))))......))))))...)))).)....))..... (-38.10 = -38.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:55 2006