Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,334,041 – 4,334,133 |
Length | 92 |
Max. P | 0.850866 |
Location | 4,334,041 – 4,334,133 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -20.59 |
Energy contribution | -20.90 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.94 |
Structure conservation index | 0.80 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4334041 92 + 23771897 AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACCGAGGGUAGUAGUUUCCAUUAUUAGUCAGC---------------- (((((((((((......((((((((.(((.(((((.....))))).)))))))))))...(((...))).))).))))))))..........---------------- ( -21.30) >DroSec_CAF1 20561 105 + 1 AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACAGAGGGUAGCAAUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG .........((...((((((((((...(((((((..((((..(((((.(((.....))).)))))..))))..))))))).---..))))))........)))).)). ( -28.00) >DroSim_CAF1 20349 105 + 1 AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGCCGGAGGGUAGUAGUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG .........((...((((((((((...(((((((..((((..((((..(((.....)))..))))..))))..))))))).---..))))))........)))).)). ( -26.90) >DroYak_CAF1 19680 105 + 1 AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGCCGGAGGGUAGUAGUUUCCAU---UAGUCAGCAAAUCAAAUCGAGGCG .........((...((((((((((...(((((((..((((..((((..(((.....)))..))))..))))..))))))).---..))))))........)))).)). ( -26.90) >consensus AAUGGAAAUGCAAAUCGAGUUGACGCUUGGAAAUCUUUAUGAUUUGUAAUGUUAAUUAUGACGGAGGGUAGUAGUUUCCAU___UAGUCAGCAAAUCAAAUCGAGGCG .((((((((((......((((((((.(((.(((((.....))))).))))))))))).((((....))))))).)))))))........................... (-20.59 = -20.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:14 2006