Locus 1498

Sequence ID 3L_DroMel_CAF1
Location 4,333,784 – 4,333,876
Length 92
Max. P 0.945408
window2333

overview

Window 3

Location 4,333,784 – 4,333,876
Length 92
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 90.20
Mean single sequence MFE -21.73
Consensus MFE -17.79
Energy contribution -18.85
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.36
Structure conservation index 0.82
SVM decision value 1.35
SVM RNA-class probability 0.945408
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4333784 92 - 23771897
UAAAUAUAAAUGGGAAGCUGCAUAAUUUUAUAAACAAAUUGGGAAGUUAAUUUCUUUUUACGAUCCCUCAACA--CACUGUGGUUUCCCUAUUG
...........(((((((..((.(((((.......)))))((((.((.((......)).))..))))......--...))..)))))))..... ( -20.10)
>DroSec_CAF1 20295 91 - 1
UAAAU--AAAGGGGAAGCUGCAUAAUUUUAUAAACAAAUUG-GAAGUUGAUUUCGUUUUACGAUCCCUCCUCAACCACUGUGUCUUCCCUUUUG
....(--((((((((((..(((((.(((((.........))-)))(((((..(((.....))).......)))))...)))))))))))))))) ( -19.90)
>DroSim_CAF1 18943 89 - 1
UAAAU--AAAGGGGAAGCUGCAUAAUUUUAUAAACAAAUUG-GAAGUUGAUUUCGUUUUACGAUCCCUCAACA--CACUGUGUCUUCCCUUUUG
....(--((((((((((..(((((.(((((.........))-)))(((((..(((.....)))....))))).--...)))))))))))))))) ( -22.70)
>DroYak_CAF1 19408 88 - 1
UGAAU--ACAGGGGAAGCUGCAUAAUUUUAUAAACAAAUUGGGAAGUUGAUUUCGUUUUACGAUCCCUCAA----CACUGUGGUUUCCCUUUUG
.....--..(((((((((..((((((((.......))))))....(((((..(((.....)))....))))----)..))..)))))))))... ( -24.20)
>consensus
UAAAU__AAAGGGGAAGCUGCAUAAUUUUAUAAACAAAUUG_GAAGUUGAUUUCGUUUUACGAUCCCUCAACA__CACUGUGGCUUCCCUUUUG
.......((((((((((((((((((((((.(((.....))).)))))))...(((.....)))...............))))))))))))))). (-17.79 = -18.85 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:13 2006