Locus 1497

Sequence ID 3L_DroMel_CAF1
Location 4,333,205 – 4,333,299
Length 94
Max. P 0.905510
window2332

overview

Window 2

Location 4,333,205 – 4,333,299
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -25.80
Consensus MFE -21.40
Energy contribution -21.12
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 1.04
SVM RNA-class probability 0.905510
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4333205 94 + 23771897
AAAUGGAUAACGCCUCGGCGGCGUCCGGGGAAGAAAAA---UGUUGGAUGGAAAAUCAUUAGGCAUGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((..(((....)))..)))))((.((.(....---(((((....((((.(((((..((.....))))))))))).)))))..).)).)).. ( -24.70)
>DroSec_CAF1 19731 92 + 1
AAAUGGAUAACGCCUCGGCGGCGUCCAGGG--GAAAAA---UGUUGGAUGGAAAAUCAUUAAGCAUGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((..(((....)))..)))))((.--((....---(((((....((((.((((...((.....)).)))))))).)))))....)).)).. ( -26.80)
>DroSim_CAF1 18375 92 + 1
AAAUGGAUAACGCCUCGGCUGGGUCCAGGG--GAAAAA---UGUUGGAUGGAAAAUCAUUAAGCAUGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((...((....))...)))))((.--((....---(((((....((((.((((...((.....)).)))))))).)))))....)).)).. ( -22.90)
>DroEre_CAF1 19699 92 + 1
AAAUGGAUAACGCCUCGGCGGCGUCCAGGG--GAAAAA---UGUUGGAUGGAAAAUCAUUAAGCACGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((..(((....)))..)))))((.--((....---(((((....((((.((((...((.....)).)))))))).)))))....)).)).. ( -26.80)
>DroYak_CAF1 18860 95 + 1
AAAUGGAUAACGCCUCGGCGGCGUCCAGGG--GGAAAAAAUUGUUGGAUGGAAAAUCAUUAAGCAUGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((..(((....)))..)))))..(--(.((....((((((....((((.((((...((.....)).)))))))).))))))...)).)).. ( -27.80)
>consensus
AAAUGGAUAACGCCUCGGCGGCGUCCAGGG__GAAAAA___UGUUGGAUGGAAAAUCAUUAAGCAUGUUGCGGUGAUUUCAUAACAAGUGUUGCCAA
...(((((..(((....)))..)))))((.................(((.....)))....(((((.(((..(((....)))..)))))))).)).. (-21.40 = -21.12 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:12 2006