Locus 1496

Sequence ID 3L_DroMel_CAF1
Location 4,332,998 – 4,333,100
Length 102
Max. P 0.618131
window2331

overview

Window 1

Location 4,332,998 – 4,333,100
Length 102
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -35.69
Consensus MFE -22.64
Energy contribution -23.28
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -2.32
Structure conservation index 0.63
SVM decision value 0.17
SVM RNA-class probability 0.618131
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4332998 102 - 23771897
GCC-CCCCCCAGACUGGCUGGCACUUUGGGGCACCACGAAACGGGUUUCGAUUUGGUUU---CUUGCUGGCUGCUAAAAUGUUGCC-----------AUCCGCUUCAACCAUCC-UCC
(((-((..((((.....))))......)))))....(((((....)))))...(((((.---...((((((.((......)).)))-----------)...))...)))))...-... ( -30.60)
>DroSec_CAF1 19513 113 - 1
GUG-CCCCCCAGACUGGCUGGCACUUUGGGGCACCACGAAACUAGUUUCGAUUUGGUUU---CUCGCUGGCUGCUAAAAUGUUGCCAACUCCUGACCAUCCGCUCCAACCAUCC-UCU
(((-((..((.....))..))))).(((((((....(((((....)))))...(((((.---...(.((((.((......)).)))).)....)))))...)))))))......-... ( -38.10)
>DroSim_CAF1 18157 113 - 1
GUG-CCCCCCAGACUGGCUGGCACUUUGGGGCACCACGAAACUAGUUUCGAUUUGGUUU---CUCGCUGGCUGCUAAAAUGUUGCCAACUCCUGACCAUCCGCUCCAACCAUCC-UCC
(((-((..((.....))..))))).(((((((....(((((....)))))...(((((.---...(.((((.((......)).)))).)....)))))...)))))))......-... ( -38.10)
>DroEre_CAF1 19493 113 - 1
GUGCCCCCCCAGACUGACUGGCACUUUGGGGCACCACGAAACGAGUUUGGAUUUGGUUUCUUCUCGCUGGCUGCUAAAAUGUUGCCAACUCCUGACCAUCCGCUCCAUCC-----UCU
(((((((.((((.....))))......)))))))........(((..((((..(((((.........((((.((......)).))))......))))).....))))..)-----)). ( -36.86)
>DroYak_CAF1 18659 115 - 1
GUGCCCCCCCAGACUGACUGGCACUUUGGGGCACCACGAAACGAGUUUGGUUUUGGUUU---CUCGCUGGCUGCUAAAAUGUUGCCAACUCCUGACCAUCCACUCCAUCCAUGACCAU
(((((((.((((.....))))......)))))))........((((..((...(((((.---...(.((((.((......)).)))).)....))))).))))))............. ( -34.80)
>consensus
GUG_CCCCCCAGACUGGCUGGCACUUUGGGGCACCACGAAACGAGUUUCGAUUUGGUUU___CUCGCUGGCUGCUAAAAUGUUGCCAACUCCUGACCAUCCGCUCCAACCAUCC_UCU
........((((.....)))).....(((((((((((((((....)))))...))))..........((((.((......)).))))..............))))))........... (-22.64 = -23.28 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:12 2006