| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,330,544 – 4,330,636 |
| Length | 92 |
| Max. P | 0.726305 |
| Location | 4,330,544 – 4,330,636 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.80 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4330544 92 + 23771897 UUGGUUGAGCAGAAAUCGCAGCGGCAG---CAGAACCAUGGCCAAUAAUUCCGAGUUCCAACUUGAGAGCUC----CAGCUGCACAUGCAAGACCGGAC ((((((..(((......((((((((..---((......))))).........(((((((.....).))))))----..)))))...)))..)))))).. ( -28.80) >DroSec_CAF1 17047 92 + 1 UUGGUCGAGCAGAAAUCCCAGCGGCAG---CAGAACCAUGGCCAAUAAUUCCGAGUUCCAACUUGAGAGCUC----CAGCUGCAACUGCAAGACCGGAC ((((((..((((......(((((((..---((......))))).........(((((((.....).))))))----..))))...))))..)))))).. ( -28.90) >DroSim_CAF1 15639 92 + 1 UUGGUCGAGCAGAAAUCCCAGCGGCAG---CAGAACCAUGGCCAAUAAUUCCGAGUUCCAACUUGAGAGCUC----CAGCUGCAACUGCAAGACCGGAC ((((((..((((......(((((((..---((......))))).........(((((((.....).))))))----..))))...))))..)))))).. ( -28.90) >DroEre_CAF1 17056 91 + 1 UUGGUUGAACAGAAAUCCCAGCGGCAG---CAGAACCAUGGCCAAUAAUUCCGAGUUCCAACUCGAGAGC-----UCAGCUGCAACUGCAAGACCGGAC ((((((...(((......(((((((..---((......))))).........((((((........))))-----)).))))...)))...)))))).. ( -23.70) >DroYak_CAF1 16231 99 + 1 UUGGUCGAGCAGAAAUCCCAGCGGCAGCGGCAGAACCAUGGCCAAUAAUUCCGACUUCCAAGCCGAGAGCUCGGCUCAGCUGCAACUGCAAGACCGGAC ((((((..((((......(((((((...((.....))...))).................((((((....))))))..))))...))))..)))))).. ( -34.10) >consensus UUGGUCGAGCAGAAAUCCCAGCGGCAG___CAGAACCAUGGCCAAUAAUUCCGAGUUCCAACUUGAGAGCUC____CAGCUGCAACUGCAAGACCGGAC ((((((..((((......(((((((...............))).....((((((((....))))).))).........))))...))))..)))))).. (-23.70 = -23.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:04 2006