Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,329,462 – 4,329,558 |
Length | 96 |
Max. P | 0.559578 |
Location | 4,329,462 – 4,329,558 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.61 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -18.57 |
Energy contribution | -19.45 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -2.19 |
Structure conservation index | 0.63 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4329462 96 + 23771897 ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAUUGCGGCUUAUAUACCAAGCGU---UAUAUAUAGAGUGGAUCUCUG-------GCUGAGAAGCGCC ....((((.((.....)).))))...(((((((((.((((...(.(((((((((........---..))))).)))).)...))))-------.))).)))))).. ( -30.10) >DroSec_CAF1 16037 99 + 1 ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGACGGAAUCCGCCUUAUAUACCAAGCUUAUACAUAUACGGAGUGGAUCUCUG-------GCUGAGAAGCGCC ....((((.((.....)).))))...(((((((((.(((((((((((((((((.............))))).)).)))))).))))-------.))).)))))).. ( -31.22) >DroSim_CAF1 14606 99 + 1 ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAAUCCGCCUUAUAUACUAAGCUUAUACAUAUAUGGAGUGGAUCUCUG-------GCUGAGAAGCGCC ....((((.((.....)).))))...(((((((((.((((((((((..((((((.............))))))..)))))).))))-------.))).)))))).. ( -35.62) >DroEre_CAF1 15987 93 + 1 ACAAGUCAAACUAUAAGUACGACAAACACUUCCGGGCGAAUUCCGCCUUAUAUAG--AGC----ACAUAUAUGGAGUGGAUCUCUG-------GCUGGGAAGCGCC ....(((..((.....))..)))...(.(((((.(((((..(((((..((((((.--...----...))))))..)))))..))..-------))).))))).).. ( -27.10) >DroYak_CAF1 15152 100 + 1 ACAAGUCAAACUAUAAGUACGACAAACACUUCCGGGCGUAUUCCGCCUUAUAUAG--AGC----ACAGAUAUGGAGUGGAUCUCUGAUGAGAAGCUGAGAAGCGCC ....(((..((.....))..)))...(.((((..(((....(((((..(((((..--...----....)))))..)))))((((....)))).)))..)))).).. ( -22.60) >consensus ACAAGUCGAACUAUAAGUACGACAAACGCUUCCGGGCGGAUUCCGCCUUAUAUAC_AAGC_U__ACAUAUAUGGAGUGGAUCUCUG_______GCUGAGAAGCGCC ....((((.((.....)).))))...((((((((((((.....))))).........(((...........(((((.....))))).......)))).)))))).. (-18.57 = -19.45 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:03 2006