Locus 1489

Sequence ID 3L_DroMel_CAF1
Location 4,328,992 – 4,329,111
Length 119
Max. P 0.861285
window2320

overview

Window 0

Location 4,328,992 – 4,329,111
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.98
Mean single sequence MFE -34.64
Consensus MFE -30.25
Energy contribution -30.20
Covariance contribution -0.05
Combinations/Pair 1.11
Mean z-score -1.70
Structure conservation index 0.87
SVM decision value 0.83
SVM RNA-class probability 0.861285
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4328992 119 + 23771897
CUGUGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUU-CAGCCAGUUAAGUGGUCUCCAAUGGCCGCAAGAAAUGUGGUAGAAAA
.(.(((((((((......(((((((.....))))..((((.(((((((.....((((..((((.(....).)-)))..))))..)))).))))))))))(....).))))))))).)... ( -36.80)
>DroSec_CAF1 15563 120 + 1
CUGAGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUUCCAGCCAGUUAAGUGGUCUCCAAUGGCCGCAAGAAAUGUGGUAGAAAA
....((((((((......(((((((.....))))..((((.(((((((...(((.....)))...(((((.......)))))..)))).))))))))))(....).))))))))...... ( -34.00)
>DroSim_CAF1 14128 120 + 1
CUGAGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUUCCAGCCAGUUAAGUGGUCUCCAAUGGCCGCAAGAAAUGUGGUAGAAAA
....((((((((......(((((((.....))))..((((.(((((((...(((.....)))...(((((.......)))))..)))).))))))))))(....).))))))))...... ( -34.00)
>DroEre_CAF1 15528 119 + 1
CUGAGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUU-CCGCCACUUAAGUGGUCUCCAAUGGCCACAAGAAAUGUGGUAAAGAA
((..(((((((((.....((.((((((...((((.((.(....).)).))))...(.....).....)))))-).)).......((((((......))))))..).))))))))..)).. ( -35.20)
>DroYak_CAF1 14681 119 + 1
CUGAGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUU-CAGCCAGUUAAGUGGUCUCCAAUGGCCACAAGAAAUGUGGUAGAAAA
....(((((((((.........(((.(((.((((.((.(....).)).))))((((.............)))-).))).)))..((((((......))))))..).))))))))...... ( -34.62)
>DroAna_CAF1 15538 119 + 1
GUGAGUCGCAUUCAAAUAGCCGAACAAGCAGUUCAUGUUGAGAGCCACGAACAAACUAAUUGGCCAACUGUU-CAGUCAGUUAAGUGGUCUCCGAUGGCCACAAGAAAAAUGGUCAAGAU
((..((.((.(((((......((((.....))))...))))).)).))..)).......(((((((((((..-....)))))..((((((......)))))).........))))))... ( -33.20)
>consensus
CUGAGCCGCAUUCAAAUAGCCGAGCAGGCAGUUCAUGUUGAGAGCCACGAACGAACUAAUUGACCAACUGUU_CAGCCAGUUAAGUGGUCUCCAAUGGCCACAAGAAAUGUGGUAGAAAA
....(((((((((.....(((((((.....))))..((((.(((((((...(((.....)))...(((((.......)))))..)))).)))))))))).....).))))))))...... (-30.25 = -30.20 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:01 2006