Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,327,787 – 4,327,903 |
Length | 116 |
Max. P | 0.559788 |
Location | 4,327,787 – 4,327,903 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.26 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -15.20 |
Energy contribution | -15.59 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.11 |
Mean z-score | -1.56 |
Structure conservation index | 0.64 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4327787 116 - 23771897 AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGCCAAUUUGUUAGCCACUUAUUCGGUUCUAAGCUCUUUUA ...(((((.(((((((....................(((((....)))))..(((----(....))))..))))))).))))).....(((((((........))))...)))....... ( -25.80) >DroSec_CAF1 14393 116 - 1 AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGGCAAUUUAUUAGCCACUUAUUCGGUUCUAAGAUCUUUUA (((((((((((.(((.....)))...........(((((.(((((((((.((...----.)).)))))))))))))).)))))........((((........))))....).))))).. ( -22.80) >DroSim_CAF1 12988 107 - 1 AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA----CAUGUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCGGUUCUA---------A ...((((((((.(((.....)))...........(((((.(((((((((.((...----.)).)))))))))))))).)))))((....)).)))...............---------. ( -22.00) >DroEre_CAF1 14288 115 - 1 AAAGGCGUUGCUUGAUUUAUUCAUUUAUGCAUUCGCUUGCAUGAUUGCAUAUUUA----CAUUUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCAGUUCUAAGUUUU-UUA ...(((((.(((((((.(((.((.(((((((......))))))).)).))).(((----(....))))..))))))).))(((.....))).)))(((((........)))))...-... ( -25.90) >DroYak_CAF1 13446 119 - 1 AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAUAUUUAUUUGCAUGUGCAAUUAUCAAGUUGCGCCAAUUUGUUAGCCACUUAUUCGGUUCUAGGCUCU-UUA ...(((((.((((((...................(....).(((((((((((........))))))))))))))))).)))))........(((((((.....)))....))))..-... ( -30.00) >DroAna_CAF1 13867 96 - 1 ------UUGGCUUGAUUUAUUCAUUUAUUCAUUCUGUUGCACGAUUGCACAGUUA----CAGGUGUAAUUAUCGGGUUGUGGCACU------------CACAAGACUCAUAUAUCUUU-- ------..((((((((.....(((((.......((((.(((....)))))))...----.))))).....))))))))(((.....------------))).................-- ( -16.00) >consensus AAAGGCGUCGCUUGAUUUAUUCAUUUAUUCAUUCGCUUGCAUGAUUGCAAAUUUA____CAUGUGUAAUUAUCAAGUUGCGGCAAUUUGUUAGCCACUUAUUCGGUUCUAAGAUCU_UUA ...(.(((.(((((((.....(((.............((((....)))).............))).....))))))).))).)..................................... (-15.20 = -15.59 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:57 2006