Locus 1486

Sequence ID 3L_DroMel_CAF1
Location 4,327,075 – 4,327,176
Length 101
Max. P 0.974014
window2315

overview

Window 5

Location 4,327,075 – 4,327,176
Length 101
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 68.08
Mean single sequence MFE -18.56
Consensus MFE -13.57
Energy contribution -13.70
Covariance contribution 0.13
Combinations/Pair 1.13
Mean z-score -1.49
Structure conservation index 0.73
SVM decision value 1.72
SVM RNA-class probability 0.974014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4327075 101 - 23771897
UGUGAAAUA-----AGUUGAGAUAAAU--AGUACUGAAUCCGUUCAUUUUUCUACAUAAUCUUU-AUGUGGGAAGCUGAACUUUAUAUGUAUAUGUUGAACCGACUGAU
.........-----(((((.(...(((--(((((.......(((((.(((((((((((.....)-)))))))))).))))).......)))).))))...))))))... ( -22.94)
>DroSec_CAF1 13720 83 - 1
-GUC-------------------------UAUACUAAAUCCGUUCAUUUUUCUACAUAAUCUUUAAUGUGGGAAGUGGAACUAUAGAUGUAUUUGAUGAACCGACUGAU
-(((-------------------------((((........((((..((((((((((........))))))))))..)))))))))))..................... ( -16.00)
>DroSim_CAF1 12303 80 - 1
-----------------------------UAUACUAAAUCCGUUCAUUUUUCUACAUAAUCUUUAAUGUGGGAAGUUGAACUUUAGAUGUAUCUGUUGAACCGACUGAU
-----------------------------(((((((((...(((((.((((((((((........)))))))))).)))))))))).))))((.((((...)))).)). ( -18.90)
>DroYak_CAF1 12714 101 - 1
AGCUAAAUAUUUGAAAUUCAGUUAAAGAAACUACCAAAUCUGCUCAUUUUUCCAUAUAAUCUUUAAUGUGGGAAGCUGAACUUC--------AUGUUGAACCGAAUGAU
...........((((.(((((((..(((..........)))........((((((((........))))))))))))))).)))--------)................ ( -16.40)
>consensus
_GU__________________________AAUACUAAAUCCGUUCAUUUUUCUACAUAAUCUUUAAUGUGGGAAGCUGAACUUUAGAUGUAUAUGUUGAACCGACUGAU
.........................................(((((.((((((((((........)))))))))).)))))............................ (-13.57 = -13.70 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:56 2006