Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,323,285 – 4,323,396 |
Length | 111 |
Max. P | 0.548475 |
Location | 4,323,285 – 4,323,396 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -19.23 |
Energy contribution | -20.29 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.13 |
Structure conservation index | 0.72 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4323285 111 - 23771897 UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUGUGUCGAGCGGAAUGGAAUGGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAACUAAUCACAG ..((((((..(((..((((((((.((((.(((((((.....))))))).)))).)))))))).....((.((((((......)))).)).))........)))..)))))) ( -33.20) >DroSec_CAF1 9969 111 - 1 UAGUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAUGGAAUGGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAUGUAAACACAG ..((((.........((((((((.((((.((..((((.....)))))).)))).)))))))).....((.((((((......)))).)).)).............)))).. ( -25.60) >DroEre_CAF1 9840 106 - 1 UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCCGUCGAGCGGAAU-----GGAACUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAUAGUAAUCACCG ((((((......((((((.....))))))..(((((((((..(.....-----.)...)))))))))((.((((((......)))).)).))......))))))....... ( -22.60) >DroYak_CAF1 8850 106 - 1 UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAU-----GGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAUAGUUAUCACAG ..((((((.((.((.................((((((((((.......-----....))))))))))((.((((((......)))).)).)).......)).)).)))))) ( -25.10) >consensus UACUGUGAAAAGUAAAUUAAUUUGAUUUGAUUUUCUGUCGAGCGGAAU_____GGAAUUGAUGGAAAGGCGCCGCGGGAAAAUGUGUGCACCGAAAAAAAAGUAAUCACAG ..((((((....((((((.....))))))..((((((((((................))))))))))((.((((((......)))).)).)).............)))))) (-19.23 = -20.29 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:45 2006