Locus 1480

Sequence ID 3L_DroMel_CAF1
Location 4,310,641 – 4,310,749
Length 108
Max. P 0.713712
window2303

overview

Window 3

Location 4,310,641 – 4,310,749
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 76.50
Mean single sequence MFE -20.28
Consensus MFE -14.62
Energy contribution -15.57
Covariance contribution 0.95
Combinations/Pair 1.17
Mean z-score -1.08
Structure conservation index 0.72
SVM decision value 0.38
SVM RNA-class probability 0.713712
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4310641 108 - 23771897
CGAAUAAUACAUAAACCUCAAACUAACUCUCUAUGUCCGCCUUGCAGAUAUCAAUCUGGUUUCACGCCACCAAGGGACAUACCCUUCGAGGAUCUGUCCAAGUGCGAU
.....................................((((((((((((.((....((((.....))))..(((((.....))))).))..)))))..)))).))).. ( -22.10)
>DroPse_CAF1 5141 88 - 1
CCAU----------------AUCUAA---UCAAUGUCCUUC-CACAGAUACCAAUCGGGUUUCGCGCCCCCCACGGACAUACCCUUCGAGGAUCUGUCCAAACUAGAU
....----------------(((((.---...((((((...-....(((....)))((((.....)))).....)))))).........(((....)))....))))) ( -18.50)
>DroSec_CAF1 4856 108 - 1
UGAAAUAUUAAUAAACCCCAAACUAACUUUCUAUGUCCGCCUUGCAGAUAUCAAUCUGGUUUCACGCCACCAAGGGACAUACCCUUCGAGGAUCUGUCCAAGUGCGAU
.....................................((((((((((((.((....((((.....))))..(((((.....))))).))..)))))..)))).))).. ( -22.10)
>DroSim_CAF1 3561 108 - 1
CGAAGAACACAUAAACCUCAAACUAACUUUCUAUGUUCGCCUUGCAGAUAUCAAUCUGGUUUCACGCCACCAAGGGACAUACCCUUCGAGGAUCUGUCCAAGUGCGAU
....................................(((((((((((((.((....((((.....))))..(((((.....))))).))..)))))..)))).)))). ( -23.40)
>DroYak_CAF1 3498 108 - 1
CGAAAGUAAAAUGGAUCUUAAACUAACAUUCUAUGCCCACCUUGCAGAUAUCAAUCUGGUUUUACGCCACCAAGGGACAUACCCUUCGAGGAUCUGUCCAAGUGCGAU
.....(((...(((((..........(((...)))....((((((((((....))))).............(((((.....))))))))))....)))))..)))... ( -19.80)
>DroPer_CAF1 19062 88 - 1
CCAU----------------AUCUAA---UCAAUGUUCUUC-CACAGAUACCAAUCGGGUUUCGCGCCCCCCACGGACAUACCCUUCGAGGAUCUGUCCAAACUAGAU
....----------------(((((.---............-..............((((.....)))).....(((((...((.....))...)))))....))))) ( -15.80)
>consensus
CGAA__A_A_AUAAACCUCAAACUAACUUUCUAUGUCCGCCUUGCAGAUAUCAAUCUGGUUUCACGCCACCAAGGGACAUACCCUUCGAGGAUCUGUCCAAGUGCGAU
.....................................((((((((((((.((....((((.....))))(.(((((.....))))).).))))))))..))).))).. (-14.62 = -15.57 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:44 2006