| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,306,933 – 4,307,133 |
| Length | 200 |
| Max. P | 0.997080 |
| Location | 4,306,933 – 4,307,053 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -40.31 |
| Consensus MFE | -40.28 |
| Energy contribution | -39.62 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.06 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.995084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4306933 120 + 23771897 AGUGCUUAAAUUUGAGGAAAUCGCACUCUGCCGCCUUUCCAAAUUGGUCUGAGGGAAAGGUGACGGGUGCUCCUAAGGCCAAAGCCGAGAACCGUGCAAAAGUAAGUAUUAUCAACACAU ((((((((..((((.((...((((((.(((.(((((((((...((.....)).))))))))).)))))))......(((....)))))...))...))))..)))))))).......... ( -41.20) >DroSim_CAF1 33148 119 + 1 AGUGCUUAAAUUUGAGGAAAUCGCACUCUGCCGCCUUUCCA-AUUGGUCUGAGGGAAAGGUGACGGGUGCUCCUAAGGCCAAAGCCGAGAACCGAGCAAAAGUAAGUAUUAUCAACACAU ((((((((..((((.((...((((((.(((.(((((((((.-...........))))))))).)))))))......(((....)))))...))...))))..)))))))).......... ( -40.70) >DroYak_CAF1 31310 120 + 1 AGUGCUUAAAUUUGAGGAAAUUGCACACUGCCGCUUUUCCAAUUUGGUCUGCGGGAAAGGUGACAGGUGCUCCUAAGGCCAAGGCCGAGAACCGAGCAAAAGUAAGUAUUAUCAACACAU ((((((((..((((.((.....((((.(((.(((((((((.............))))))))).)))))))......(((....))).....))...))))..)))))))).......... ( -39.02) >consensus AGUGCUUAAAUUUGAGGAAAUCGCACUCUGCCGCCUUUCCAAAUUGGUCUGAGGGAAAGGUGACGGGUGCUCCUAAGGCCAAAGCCGAGAACCGAGCAAAAGUAAGUAUUAUCAACACAU ((((((((..((((.((...((((((.(((.(((((((((.............))))))))).)))))))......(((....)))))...))...))))..)))))))).......... (-40.28 = -39.62 + -0.66)
| Location | 4,307,013 – 4,307,133 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -33.78 |
| Energy contribution | -33.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.16 |
| Structure conservation index | 1.01 |
| SVM decision value | 2.79 |
| SVM RNA-class probability | 0.997080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4307013 120 - 23771897 UUAAACUGAAACUUAAACUACAGCCGUUGGACAUUAAAAGUAAUCUUGUGAACACGUUCUCACGUGCAAUCCAUUUGGCAAUGUGUUGAUAAUACUUACUUUUGCACGGUUCUCGGCUUU .....................(((((..((((..(((((((((..((((.((((((((.(((.(((.....))).))).)))))))).))))...)))))))))....)))).))))).. ( -32.40) >DroSim_CAF1 33227 120 - 1 UAAAACUGAAACUUAAACUACGGCCGUUGGACAUUAAAAGUAAUCUUGUGAACACGUUCUCACGUGCAAUCCAUUUGGCAAUGUGUUGAUAAUACUUACUUUUGCUCGGUUCUCGGCUUU .....................(((((..((((..(((((((((..((((.((((((((.(((.(((.....))).))).)))))))).))))...)))))))))....)))).))))).. ( -32.40) >DroYak_CAF1 31390 114 - 1 UAAAACUGA------CACUACGGCCGUUGGACAUUAAAAGUAAUCUUGUGAACACGUUCUCACGUGCAAUCCAUUUGGCAAUGUGUUGAUAAUACUUACUUUUGCUCGGUUCUCGGCCUU .........------......(((((..((((..(((((((((..((((.((((((((.(((.(((.....))).))).)))))))).))))...)))))))))....)))).))))).. ( -35.20) >consensus UAAAACUGAAACUUAAACUACGGCCGUUGGACAUUAAAAGUAAUCUUGUGAACACGUUCUCACGUGCAAUCCAUUUGGCAAUGUGUUGAUAAUACUUACUUUUGCUCGGUUCUCGGCUUU .....................(((((..((((..(((((((((..((((.((((((((.(((.(((.....))).))).)))))))).))))...)))))))))....)))).))))).. (-33.78 = -33.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:43 2006