Locus 1478

Sequence ID 3L_DroMel_CAF1
Location 4,306,738 – 4,306,857
Length 119
Max. P 0.763043
window2300

overview

Window 0

Location 4,306,738 – 4,306,857
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.77
Mean single sequence MFE -30.43
Consensus MFE -29.95
Energy contribution -30.07
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.70
Structure conservation index 0.98
SVM decision value 0.51
SVM RNA-class probability 0.763043
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4306738 119 - 23771897
CCAGGAAAUGUGGGCAAAAGUUAUGGCAAUCCUGCAUGACAUGCGGCAUAUGCAAUUGCGGAAGCAG-AAGAACGCGCUAGCUUGUUUUAUAUAAAUAGCAACAAUUGUACAUUUUACUU
....(((((((((((....((((((.((....))))))))..(((((....))..((((....))))-.....)))))).(((.((((.....)))))))........)))))))).... ( -31.00)
>DroSim_CAF1 32950 119 - 1
CCAGGAAAUGUGGGCAAAAGUUAUGGCAAUCCUGCAUGACAUGCGGCAUAUGCAAUUGCGGAAGCAA-AAGAACGCGCUAGCUUGUUUUAUAUAAAUAGCAACAAUUGUACAUUUUACUU
....(((((((((((....((((((.((....))))))))..(((((....))..((((....))))-.....)))))).(((.((((.....)))))))........)))))))).... ( -31.30)
>DroYak_CAF1 31110 120 - 1
CAAGGAUAUGUGGGCAAAAGUUAUGGCAAUCCUGCAUGACAUGCGGCAUAUGCAAUUGCGGAAGCAAAAAGAACGCGCUAGCUUGUUUUAUAUAAAUAGCAACAAUUGUACAUUUUACUU
.(((.....(((..(((..((((((.((....))))))))..(((((....))..((((....))))......)))((((..((((.....)))).)))).....)))..)))....))) ( -29.00)
>consensus
CCAGGAAAUGUGGGCAAAAGUUAUGGCAAUCCUGCAUGACAUGCGGCAUAUGCAAUUGCGGAAGCAA_AAGAACGCGCUAGCUUGUUUUAUAUAAAUAGCAACAAUUGUACAUUUUACUU
....(((((((((((....((((((.((....))))))))..(((((....))..((((....))))......)))))).(((.((((.....)))))))........)))))))).... (-29.95 = -30.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:41 2006