Locus 1476

Sequence ID 3L_DroMel_CAF1
Location 4,300,676 – 4,300,769
Length 93
Max. P 0.671835
window2297

overview

Window 7

Location 4,300,676 – 4,300,769
Length 93
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 84.16
Mean single sequence MFE -23.15
Consensus MFE -16.07
Energy contribution -17.21
Covariance contribution 1.14
Combinations/Pair 1.18
Mean z-score -2.60
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.671835
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4300676 93 + 23771897
ACCAAGAAAAGGCCAAAGAAAAAGGCCAAAUUGGGCUUCUCGGAUGAUGAAGAUAGCGAUGAUGAGGUUG---AGGAAUUCGACGAGG-----------AAAGUGAC
.((((.....((((.........))))...)))).((((((((((..(...(((..(......)..))).---.)..)))))).))))-----------........ ( -20.40)
>DroVir_CAF1 19682 105 + 1
ACUAAGAAGCGUCAAAAGAAGAAGGCCAAAUUGGGUUUCUCCGAUGACGAAGAAAGCGAAGAAGAUUCUGCUGAUAAUUUGGACGA--GGAGCAGCCGGAAAGUGAC
(((......(((((...(.(((((.((.....)).))))).)..)))))................((((((((....(((....))--)...))).))))))))... ( -21.80)
>DroSec_CAF1 24465 93 + 1
ACCAAGAAAAGGCCAAAGAAAAAGGCCAAAUUAGGCUUCUCGGAUGAUGAAGAUAGCGAUGGUGAAGUUC---AGGAAUUCGAGGAGG-----------AAAGUGAC
..........((((.........))))........((((((((((..((((....((....))....)))---)...)))))))))).-----------........ ( -24.00)
>DroSim_CAF1 26850 93 + 1
ACCAAGAAAAGGCCAAAGAAAAAGGCCAAAUUGGGCUUCUCGGAUGAUGAAGAUAGCGAUGGUGAAGUUG---AGGAAUUCGAGGAGG-----------AAAGUGAC
.((((.....((((.........))))...)))).((((((((((..(...(((.((....))...))).---.)..)))))))))).-----------........ ( -23.70)
>DroEre_CAF1 24638 93 + 1
ACCAAGAAAAGGCCAAAGAAAAAGGGCAAAUUGGGCUUCUCGGAUGAUGAAGACAGCGAUGGUGCAGUUG---AGGAAUUCGAGGAGG-----------AAAGUGAC
.((((......(((..........)))...)))).((((((((((..(...(((.(((....))).))).---.)..)))))))))).-----------........ ( -24.40)
>DroYak_CAF1 25017 93 + 1
ACCAAGAAAAGGCCAAAGAAAAAGGCCAAGUUGGGCUUCUCGGAUGAUGAAGAUAGCGAUGGUGAAGCUG---AGGAAUUCGAGGAGG-----------AAAGCGAC
.((((.....((((.........))))...)))).((((((((((..(..((...((....))....)).---.)..)))))))))).-----------........ ( -24.60)
>consensus
ACCAAGAAAAGGCCAAAGAAAAAGGCCAAAUUGGGCUUCUCGGAUGAUGAAGAUAGCGAUGGUGAAGUUG___AGGAAUUCGAGGAGG___________AAAGUGAC
.((((.....((((.........))))...)))).((((((((((........((((.........)))).......)))))))))).................... (-16.07 = -17.21 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:38 2006