| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,298,701 – 4,298,813 |
| Length | 112 |
| Max. P | 0.615609 |
| Location | 4,298,701 – 4,298,813 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -42.07 |
| Consensus MFE | -21.87 |
| Energy contribution | -21.43 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4298701 112 - 23771897 UCCUUGGUUUCGGCUGAUGAUACGGCACGUUGAUGUGUGCCUCGCGGUGCAAACGCUGCUGUUCACUUUGGAUGGCCUGCAUCCCCUCCAGUGCUUUCUUAGCUGAUUCCUA------ .....((..((((((((.((...(((((...((((((.(((..((((((....)))))).((((.....))))))).)))))).......))))).))))))))))..))..------ ( -40.50) >DroVir_CAF1 17788 118 - 1 UGCGUGGCUUCGGCUGAUGGUAUGGCACGCUGACGUGUGCCUCACGAUGCAGCCGCUGCUGCUCGCUUUGGAUGGCCUGCAUCUCAUCUAGCGCCUUCUUGGCUGAUGCCUGCAAGGG ...(..((..((((((((.((..(((((((....)))))))..)).)).))))))..))..).((((.((((((.....)))).))...))))((((...(((....)))...)))). ( -52.30) >DroGri_CAF1 22535 118 - 1 UGCGCGGCUUAGGCUGAUGAUAGGGUACACUAAUGUGUGCCUCCCGAUGCAGUCGCUGCUGCUCGCUUUGUAAGGCCUGAAUUCCGUCCAGAGCUUUCUUAGCUGAGGCCUGCAAUAG ((((.(((((.((((((.((..((((((((....))))))))...((.(((((....)))))))((((((...((........))...))))))..)))))))).))))))))).... ( -46.30) >DroWil_CAF1 28869 112 - 1 UCCUUGGCUUGGGCUGGUGAUAUGGCACACUAAUUUGAGCCUCACGAUGUAACCGUUGUUGCUCACUCUGUAUAGCCUGCAUUCCGUCGAGAGCCUUUUUGGCUGAUGCCUA------ .....(((((.(((.((......(((..((.....(((((...((((((....)))))).)))))....))...)))......)))))..))))).....(((....)))..------ ( -31.30) >DroMoj_CAF1 22540 118 - 1 UGCGUGGCUUGGGUUGAUGAUAGGGCACACUUAUAUGCGCCUCUCGGUGCAGCCUUUGCUGCUCACUUUGUAUGGCCUGCAUCCCAUCUAAAGCUUUUUUAGCUGACGCCUGCAAUGA ((((.(((((((((.((((.((((.((.((........(((....)))(((((....))))).......)).)).))))))))..))))))((((.....))))...))))))).... ( -38.20) >DroAna_CAF1 22365 118 - 1 UUCUGGGCUUGGGCUGAUGGUAGGGCACAUUAAUAUGAGCCUCACGGUGAAGACGCUGUUGCUCACUUUGGAUGGCCUGCAUCCCGUCUAGUGCCUUCUUUGCAGAUGCCUGCAAUAG ....((((((((((.((((...((((.((((....(((((...((((((....)))))).))))).....)))))))).))))..)))))).))))...((((((....))))))... ( -43.80) >consensus UGCGUGGCUUGGGCUGAUGAUAGGGCACACUAAUGUGUGCCUCACGAUGCAGCCGCUGCUGCUCACUUUGGAUGGCCUGCAUCCCGUCUAGAGCCUUCUUAGCUGAUGCCUGCAAU_G .....(((.((((((........(((.(((....))).)))....((.(((((....))))))).........)))))).............(((.....)))....)))........ (-21.87 = -21.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:37 2006