Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,298,423 – 4,298,541 |
Length | 118 |
Max. P | 0.873256 |
Location | 4,298,423 – 4,298,541 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.34 |
Mean single sequence MFE | -32.31 |
Consensus MFE | -26.78 |
Energy contribution | -26.58 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.67 |
Structure conservation index | 0.83 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4298423 118 - 23771897 CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUAACUUCCUCAGCAGUUUCUUCCGGUUCAGAUUCGGAGUCCACCAAUCCUUUCAGUUUGUUUUUGGGUGAACU ..(((((((((((.(((......(((((......))))).((((..((((........))))..)))))))...)))))))))))((((........(.....)......)))).... ( -30.84) >DroSec_CAF1 22221 118 - 1 CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUUACUUCCGCAGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAACCCUUUCAGUUUAUUUUUGGGUGAACU ..(((((((((((.(((..(((((((((......))))).)))).........((....)).......)))...))))))))))).....((((...............))))..... ( -31.36) >DroSim_CAF1 23378 118 - 1 CCGAUUCCGAGUCCACCAACCCUUUAAGUUUGUUCUUGACGGGACUUACUUCCGCGGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAACCCUUUCAGUUUGUUUUUGGGUGAACU ..(((((((((((.(((..(((.(((((......))))).)))..........((....)).......)))...))))))))))).....((((...............))))..... ( -34.26) >DroEre_CAF1 22390 118 - 1 CCGAAUCCGAGUCUAUCAAUCCAUUGAGUUUGUUUUUGACGGGACUCACUUCUGCAGCAGUUUCUUCCGGCUCAGACUCGGAGUCCACCAAUCCCUUCAAUUUGUUUUUGGGUGAACU ..((.(((((((((.((((....))))............(((((...(((.(....).)))...)))))....))))))))).))((((.....(........)......)))).... ( -27.30) >DroYak_CAF1 22776 118 - 1 CCGAUUCCGAGUCCACCAGUCCAUUGAGUUUGUUCUUGAUGGGACUCACUGCUGCAGCCGCCUCUUCCGGCUCAGAUUCGGAGUCCACCAAUCCCUUCAGCUUGUUUUUGGGUGAACU ..(((((((((((....(((((((..((......))..)).)))))......((.(((((.......))))))))))))))))))..........((((.((.......)).)))).. ( -37.80) >consensus CCGAUUCCGAGUCCACCAAUCCUUUAAGUUUGUUCUUGACGGGACUCACUUCCGCAGCAGCUUCUUCCGGUUCAGAUUCGGAGUCCACCAAUCCUUUCAGUUUGUUUUUGGGUGAACU ..(((((((((((.(((..(((.(((((......))))).)))..........((....)).......)))...)))))))))))((((.....................)))).... (-26.78 = -26.58 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006