Locus 1472

Sequence ID 3L_DroMel_CAF1
Location 4,279,767 – 4,279,861
Length 94
Max. P 0.561054
window2292

overview

Window 2

Location 4,279,767 – 4,279,861
Length 94
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 80.11
Mean single sequence MFE -19.45
Consensus MFE -14.14
Energy contribution -14.33
Covariance contribution 0.20
Combinations/Pair 1.21
Mean z-score -1.14
Structure conservation index 0.73
SVM decision value 0.05
SVM RNA-class probability 0.561054
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4279767 94 - 23771897
CCUUUUCUA-AUGAAUUUC---CCCUUCUUCUCUAUC--CACAGCACCUGUCGGUGCAUGGCGAUGCCUCGCACAUUGAGUCCGCCGCCCUGCCACUCGA
........(-(((......---...............--..(((((((....))))).))((((....)))).))))((((..((......)).)))).. ( -19.00)
>DroVir_CAF1 3148 88 - 1
UACUUACUC-AUGAAGUUC---UUU---UACUCU-----GGCAGCAUCUCUCGGUUCACGGCGAUGCCUCACACAUUGAAUCCGCCGCACUGCCACUGGA
.........-.........---...---..(..(-----(((((.(((....)))...(((((.....(((.....)))...)))))..))))))..).. ( -16.30)
>DroPse_CAF1 3125 100 - 1
UCUUUUUUACAUUCAACUAAUCCUCAAUCUUUCUAUCCUUACAGCAUCUGGCGGUGCAUGGCGAUGCCUCACACAUCGAAUCCGCCGCUUUGCCACUGGA
...................................(((.....(((...(((((((.((..(((((.......))))).)).))))))).)))....))) ( -23.20)
>DroSec_CAF1 3518 94 - 1
CCUUUUCUA-AUGCAUUUC---CCCUUCUUUUCUUUC--CACAGCACCUGUCGGUGCAUGGCGAUGCCUCGCACAUUGAGUCCGCCGCCCUGCCCCUCGA
.........-..(((....---...............--....(((((....)))))..((((.((.((((.....))))..)).)))).)))....... ( -19.40)
>DroSim_CAF1 3564 93 - 1
CCUUUUCUA-AUGCAUUUC---CCCUUCUUUUCU-UC--CACAGCACCUGUCGGUGCAUGGCGAUGCCUCGCACAUUGAGUCCGCCGCCCUGCCCCUCGA
.........-..(((....---............-..--....(((((....)))))..((((.((.((((.....))))..)).)))).)))....... ( -19.40)
>DroYak_CAF1 3424 95 - 1
CCUUUUCUA-AUGCAUUUAC--CCCUUGUUUUCUUUC--CACAGCACCUCUCGGUGCAUGGCGAUGCCUCGCACAUUGAGUCCGCCGCCCUGCCCCUCGA
.........-..(((.....--...............--....(((((....)))))..((((.((.((((.....))))..)).)))).)))....... ( -19.40)
>consensus
CCUUUUCUA_AUGCAUUUC___CCCUUCUUUUCU_UC__CACAGCACCUGUCGGUGCAUGGCGAUGCCUCGCACAUUGAGUCCGCCGCCCUGCCACUCGA
...........................................(((((....))))).(((((....((((.....))))..)))))............. (-14.14 = -14.33 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:33 2006