Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,277,321 – 4,277,412 |
Length | 91 |
Max. P | 0.547477 |
Location | 4,277,321 – 4,277,412 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.03 |
Mean single sequence MFE | -15.86 |
Consensus MFE | -11.42 |
Energy contribution | -12.06 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.72 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4277321 91 + 23771897 UCUUUAU--UCUAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAA-GGGCUGUUAUCAAAGCCCC .......--...........(((..(((..(((.((((((.......))))))....)))...))).)))....-(((((........))))). ( -17.80) >DroSec_CAF1 1074 93 + 1 UCUUUAUAGACUAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAAAAGGCUGUUAUCAAAGCC-C .((((...((((........((((....))))..((((((.......))))))....))))((((((.........))))))....))))..-. ( -15.50) >DroSim_CAF1 1120 93 + 1 UCUUUAUAGACAAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAAAAGGCUGUUAUCAGAGGC-C ....(((((((((..((...((((....)))).))..)))))))))......((((..((.((((((.........)))))).))..)))).-. ( -20.60) >DroEre_CAF1 978 91 + 1 UCUUUUAAGACCAUUCAUUCGUUUUGCCAAAGUUGUUUUGUUUAUAACAAAACUUCCAGUCACGACCAAAACAA-AGGCUGUUAUCAAUGCC-- ....................((((((........(((((((.....))))))).....((....))))))))..-.(((..........)))-- ( -11.40) >DroYak_CAF1 995 87 + 1 ----UUAAGACCAUUCAUUCGUUUUGCCAAACUUCUUUUGUUUAUAACAAAACUUCCAGUCACGGCCAACACAA-AGGCUGUUAUCAAAGCC-- ----................((((((.........((((((.....)))))).........((((((.......-.))))))...)))))).-- ( -14.00) >consensus UCUUUAUAGACCAUUCAUUCGUUUUGCCAAACUUGUUUUGUUUAUACCAAAACUUCCAGUCACGGCCAACACAA_AGGCUGUUAUCAAAGCC_C ....................((((((........((((((.......))))))........((((((.........))))))...))))))... (-11.42 = -12.06 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:32 2006