Locus 1470

Sequence ID 3L_DroMel_CAF1
Location 4,270,932 – 4,271,027
Length 95
Max. P 0.756975
window2290

overview

Window 0

Location 4,270,932 – 4,271,027
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.26
Mean single sequence MFE -31.35
Consensus MFE -18.96
Energy contribution -19.44
Covariance contribution 0.48
Combinations/Pair 1.31
Mean z-score -2.20
Structure conservation index 0.60
SVM decision value 0.49
SVM RNA-class probability 0.756975
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4270932 95 - 23771897
GGUACUGGGAACUGCCGGACAUGGUCUUGUAUCUAAGUAUGGAAUGCAAGAGUUCCACAUGGUUAAGA-ACCAUUUCUGGCAGUAGCAGAGGCUCU
(((.(((...(((((((((.(((((((((...(((.((..(((((......))))))).))).)))).-))))).)))))))))..)))..))).. ( -33.90)
>DroSec_CAF1 4406 95 - 1
GGUACUGGGAACUGCCGGACAUGGUCUUGUAGCUAAGUAUGGAAUGCAAGAGUUCCACAUGGUUAGGA-ACCAUUUCUGGCAGUAGCAGAGGCUCU
(((.(((...(((((((((.(((((.((.((((((.((..(((((......))))))).)))))).))-))))).)))))))))..)))..))).. ( -36.50)
>DroSim_CAF1 4407 95 - 1
GGUACUGGGAACUGCCGGACAUGGUCUUGUACCUAAGUAUGGAAUGCAAGGGUUCCACAUGGUUAGGA-ACAAUUUCUGGCAGUAGCAGAGGCUCU
(((.(((...(((((((((.((..(((((.(((......((((((......))))))...))))))))-...)).)))))))))..)))..))).. ( -30.10)
>DroEre_CAF1 4355 95 - 1
GGUACUGGGAACUGCCGGACAUGGUCUUGUAUCUAAGUAUGGAAUGCAAGAGUUUCACGUGGUUAAGA-CCCAUGUCUGGCCGUUGCAAAGGCUUU
(((....(.(((.((((((((((((((((...(((....((((((......))))))..))).)))))-.))))))))))).))).)....))).. ( -35.70)
>DroYak_CAF1 4485 94 - 1
GGUACUGGGAACUGCCGGACAUGGUCUUGUAUCUAAGUAUGGAUUACAAGAGUACCACAUGGUUGAGA-CCCAUUUCUGGCCGU-ACAAAAGCCCU
(((.....(.((.((((((.(((((((((((((((....)))).)))))))..(((....))).....-.)))).)))))).))-.)....))).. ( -29.00)
>DroPer_CAF1 5029 91 - 1
GGUACUGCGAGCUGCCAGACAUGGUUUUGUACCUAAAAGUGGA-----UGAUUUCCAAAUGGAACGUACACUGAGUAUGGCCACGACAAAGAGCCU
(((.(((((((..((((....)))))))))........((((.-----....((((....))))(((((.....))))).)))).....)).))). ( -22.90)
>consensus
GGUACUGGGAACUGCCGGACAUGGUCUUGUAUCUAAGUAUGGAAUGCAAGAGUUCCACAUGGUUAAGA_ACCAUUUCUGGCAGUAGCAAAGGCUCU
(((.......((.((((((.(((((((((...(((....((((((......))))))..))).)))))..)))).)))))).)).......))).. (-18.96 = -19.44 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:31 2006