| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,259,913 – 4,260,010 |
| Length | 97 |
| Max. P | 0.858146 |
| Location | 4,259,913 – 4,260,010 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -14.03 |
| Energy contribution | -13.62 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4259913 97 + 23771897 ACCUCAAGGAAAUCAUUCUGCAGAGGAAUACCCCCUCAUCGAUUCUCUCCAACGAAACUUUGGA---GGAAUCCACAACCA---------------CGACGAUGCCGACCACAAC .((....)).......((.(((((((.......))))...(((((.((((((.......)))))---))))))........---------------......))).))....... ( -22.50) >DroSec_CAF1 24291 97 + 1 ACCUCAAGGAGAUCAUUCUGCAGAGGAAUACACCCUCAUCGAUUCUCUCCAACGAAACUUUGGA---GGAAUCCACAACCA---------------CGACGAUGCCGACGACAAC .((....)).......((.(((((((.......))))...(((((.((((((.......)))))---))))))........---------------......))).))....... ( -22.50) >DroSim_CAF1 24123 97 + 1 ACCUCAAGGAGAUCAUUCUGCAGAGGAAUACCCCCUCAUCGAUACUCUCCAACGAAACUUUGGA---GGAAUCCACAACCA---------------CGACGAUGCCGACGACAAC .((((..(((((....((....((((.......))))...))...)))))..(((....)))))---))............---------------((.((....)).))..... ( -19.00) >DroEre_CAF1 24973 112 + 1 ACCUCAAGGAGAUCAUCUUGCAGAGGAAUACCCCUUCAUCGAUUCUCUCCAACGAAACUUUGGA---GGAAUCCACAACAAUGACGCCAACCACAACGACGAUGCCAACCACAAC .((((.((((.....))))...))))..........(((((((((.((((((.......)))))---))))))........((....))...........))))........... ( -22.30) >DroYak_CAF1 26811 112 + 1 ACCUCAAGGAGAUCAUCUUGCAGAGGAAUACUCCCUCAUCGAUUGUCUCCAACGAAACUUUGGA---GGAGUCCACAACGACGUCGGCUACCACAACUACGAUGCCAACCACAAC .((((..((((((.(((.((.((.(((....)))))))..))).))))))..(((....)))))---)).(((......)))((.(((...............))).))...... ( -27.36) >DroAna_CAF1 22159 97 + 1 ACCUUAAGGAAAUUAUUCUUCAAAGGAAUACUCCAUCGGCGAUUUUAUCCAACGCCUCAUUUGAUCGGGACUUCACAACUA---------------CAAC---CCCAACCACAAC .......((..........((((((((....)))...((((...........))))...)))))..(((............---------------....---)))..))..... ( -15.49) >consensus ACCUCAAGGAGAUCAUUCUGCAGAGGAAUACCCCCUCAUCGAUUCUCUCCAACGAAACUUUGGA___GGAAUCCACAACCA_______________CGACGAUGCCAACCACAAC .((((.((((.....))))...))))..............((((((.(((((.......)))))...)))))).......................................... (-14.03 = -13.62 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:28 2006