Locus 1466

Sequence ID 3L_DroMel_CAF1
Location 4,252,028 – 4,252,120
Length 92
Max. P 0.500000
window2280

overview

Window 0

Location 4,252,028 – 4,252,120
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -26.86
Consensus MFE -13.78
Energy contribution -13.98
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.51
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4252028 92 - 23771897
--CACAUACGUUCAUAUGUAUGUAUCCAUGGAAUGGAGUGGGUACUCUUUGGGUGCUCAGAACCACGCGGCUUGGAU--ACAAAGUA-------UGGCACUCA
--.......((((((((...(((((((((.(..(((..((((((((.....))))))))...)))..).)..)))))--)))..)))-------))).))... ( -29.20)
>DroSec_CAF1 16500 88 - 1
--CACAUACAU----AUGUAUGUAUCUAUGGGAUGGAGUGGGUACUCUUUGGGUGCUCAGAACCACGCGGCUUGGAU--ACAAAGUA-------UGGCACUCA
--......(((----((...((((((((((.(.(((..((((((((.....))))))))...)))).))...)))))--)))..)))-------))....... ( -26.60)
>DroSim_CAF1 16169 84 - 1
--CACAUACAU----ACA----UAUCUAUGUGAUGGAGUGGGUACUCUUUGGGUGCUCAGAACCACACGGCUUGGAU--ACAAAGUA-------UGGCACUCA
--..(((((..----...----((((((((((.(((..((((((((.....))))))))...)))))))...)))))--)....)))-------))....... ( -24.70)
>DroEre_CAF1 17205 82 - 1
CCCACAUACGU----AC--------AUAUGUGAUGGAGUGGGUACUCUUUGGGUGCUCAGAAGCACUCGGCUUGGAU--ACAAAGUA-------AGGCACUCA
..((((((...----..--------.))))))...(((((..((((..(((((((((....))))))))).(((...--.)))))))-------...))))). ( -24.70)
>DroYak_CAF1 18898 86 - 1
--CACAUACAU----AC-----------UGCGAUGAAGUGGGUACUCCUUGGGUGCUCGGAAGCACUCGGCUUGGAUGUACAAUGUAUGUACAAUGGCACUCA
--.((((((((----.(-----------..(......)..)((((((((((((((((....)))))))))...))).)))).))))))))............. ( -29.10)
>consensus
__CACAUACAU____AC_____UAUCUAUGGGAUGGAGUGGGUACUCUUUGGGUGCUCAGAACCACGCGGCUUGGAU__ACAAAGUA_______UGGCACUCA
...................................(((((((((((.....)))))))...........(((((......))).))............)))). (-13.78 = -13.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:22 2006