Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,248,446 – 4,248,559 |
Length | 113 |
Max. P | 0.997368 |
Location | 4,248,446 – 4,248,559 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -18.22 |
Energy contribution | -18.67 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -3.09 |
Structure conservation index | 0.92 |
SVM decision value | 2.85 |
SVM RNA-class probability | 0.997368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4248446 113 + 23771897 AAAUAUGGAAGAGAAAUGUCAUUUCAUCAUAAGAUCAGUUGAUCCUAGAUGAAGAAACAUGUGCCUAUAAUAAAACAUGUAAACAAGAAAACGUAUAUAAACAUACAUACAUU ..(((((..............(((((((.((.((((....)))).)))))))))..((((((............))))))...........)))))................. ( -18.50) >DroSec_CAF1 10173 98 + 1 UAAUAUGGAAGAGAAAUGACAUAUCAUCAUAGGAUCAGUUGAUCCUAGAAGAAGAAACAUGUGCCUAUUAUAAAACAUGUAAACAAGAAAACAUAUAU--------------- ..(((((................((.((.(((((((....))))))))).))....((((((............))))))...........)))))..--------------- ( -19.60) >DroSim_CAF1 10447 91 + 1 UAAUAUGGAAGAGAAAUGACAUUUCAUCAUAGGAUCAGUUGAUCCUAGAAGAAGAAACAUGUGCCUAUUAUAAAACAUGUAA-------AACAUAUAU--------------- ..(((((..............((((.((.(((((((....))))))))).))))..((((((............))))))..-------..)))))..--------------- ( -21.10) >consensus UAAUAUGGAAGAGAAAUGACAUUUCAUCAUAGGAUCAGUUGAUCCUAGAAGAAGAAACAUGUGCCUAUUAUAAAACAUGUAAACAAGAAAACAUAUAU_______________ ..(((((..............((((.((.(((((((....))))))))).))))..((((((............))))))...........)))))................. (-18.22 = -18.67 + 0.45)
Location | 4,248,446 – 4,248,559 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -20.33 |
Consensus MFE | -14.25 |
Energy contribution | -14.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.97 |
Structure conservation index | 0.70 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4248446 113 - 23771897 AAUGUAUGUAUGUUUAUAUACGUUUUCUUGUUUACAUGUUUUAUUAUAGGCACAUGUUUCUUCAUCUAGGAUCAACUGAUCUUAUGAUGAAAUGACAUUUCUCUUCCAUAUUU ((((((((((....))))))))))............(((((......))))).(((((..(((((((((((((....))))))).))))))..)))))............... ( -26.60) >DroSec_CAF1 10173 98 - 1 ---------------AUAUAUGUUUUCUUGUUUACAUGUUUUAUAAUAGGCACAUGUUUCUUCUUCUAGGAUCAACUGAUCCUAUGAUGAUAUGUCAUUUCUCUUCCAUAUUA ---------------..(((((...............((((......))))(((((((...((...(((((((....))))))).)).)))))))...........))))).. ( -17.20) >DroSim_CAF1 10447 91 - 1 ---------------AUAUAUGUU-------UUACAUGUUUUAUAAUAGGCACAUGUUUCUUCUUCUAGGAUCAACUGAUCCUAUGAUGAAAUGUCAUUUCUCUUCCAUAUUA ---------------..(((((..-------..((((((.((......)).))))))...(((.(((((((((....))))))).)).)))...............))))).. ( -17.20) >consensus _______________AUAUAUGUUUUCUUGUUUACAUGUUUUAUAAUAGGCACAUGUUUCUUCUUCUAGGAUCAACUGAUCCUAUGAUGAAAUGUCAUUUCUCUUCCAUAUUA .................(((((...........((((((.((......)).))))))....((.(((((((((....))))))).)).))................))))).. (-14.25 = -14.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:21 2006