| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,241,110 – 4,241,229 |
| Length | 119 |
| Max. P | 0.525350 |
| Location | 4,241,110 – 4,241,229 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -35.55 |
| Consensus MFE | -21.42 |
| Energy contribution | -20.82 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4241110 119 - 23771897 AAGAAGUGUCGUUGUGGUCUGCACGAAAAGGAGUUGCCCUGCUCCAAAGAGUUUGCAUGCGAGACUAAAUGCAAGCAAAUGCGUGAUUGCGGCAAGCAUGCAUGCAAUAGAAAGGUAUA- .....((..(((((..(((((((......(((((......))))).....((((((((..........))))))))...)))).)))..))))..(((....)))........)..)).- ( -35.60) >DroVir_CAF1 2995 120 - 1 AAGAAGUGUCGCUGCGGUCUGCACGAGAAGGAGCUACCCUGCUCCAAGGAGUUCAACUGCGAAACCAAAUGCAAACAGAUGCGCGACUGUGGCAAGCAUGCCUGUAAUCGCAAGGUAUAU .....((...((..(((((.((.......(((((......)))))..((..(((......))).))....(((......))))))))))..))..))((((((((....)).)))))).. ( -37.40) >DroGri_CAF1 3145 120 - 1 AAGCAGUGUCGUUGUGGACUGCACGAGAAGGAAUUGCCCUGCUCUAAGGAGUUCAACUGCGAAACCAAAUGCAAACUGAUGCGCGACUGCAACAAGCAUGCGUGCAAUCGAAAGGUUCCA ..(((((.((((..((((((.(..(((.(((......))).)))...).))))))...)))).))....))).......((((((..(((.....)))..))))))(((....))).... ( -36.80) >DroWil_CAF1 7840 112 - 1 AAGAAGUGCCGCUGUGGUCUACACGAAAAGGAGCUGCCAUGCUCUAAAGAGUUUACGUGUGAUACUAAAUGCAAGCAAGUUCGGGACUGCGGAAAACAUGCCUGCAACAGAA-------- ...........((((.(((.((((((((.(((((......)))))......))).))))))))......((((.(((..(((.(.....).)))....))).))))))))..-------- ( -27.00) >DroMoj_CAF1 3213 120 - 1 AAGAAAUGCCGCUGCGGCCUGCAUGAGAAGGAGAUGCCCUGCUCCAAGGAGUUCAACUGCGAGACCAAAUGCAAGCAGAUGCGAGAUUGUGGCAAACAUGCUUGCAAUCGCAAGGUACAA ......((((..(((((.((((((((..(((......)))((((....)))))))..))).)).))...((((((((..(((.(.....).)))....))))))))...))).))))... ( -36.60) >DroAna_CAF1 2957 120 - 1 AAGAAAUGUCGCUGUGGUUUGCAUGAAAAGGAGCUACCCUGCUCUAAGGAGUUCGCAUGCGAGACAAAAUGCAAACAAAUGCGGGACUGCGGCAAGCAUGCUUGCAACCGCAAGGUACCA .........(((....((((((((.....(((((......)))))..(...((((....)))).)...))))))))....)))((......(((((....))))).(((....))).)). ( -39.90) >consensus AAGAAGUGUCGCUGUGGUCUGCACGAAAAGGAGCUGCCCUGCUCCAAGGAGUUCAACUGCGAGACCAAAUGCAAACAAAUGCGCGACUGCGGCAAGCAUGCCUGCAAUCGAAAGGUACAA .....(((..(((((((((((((......(((((......))))).....(((....((((........)))))))...)))).)))))))))...))).......(((....))).... (-21.42 = -20.82 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:19 2006