Locus 1463

Sequence ID 3L_DroMel_CAF1
Location 4,240,991 – 4,241,091
Length 100
Max. P 0.500000
window2276

overview

Window 6

Location 4,240,991 – 4,241,091
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -24.79
Consensus MFE -17.74
Energy contribution -17.05
Covariance contribution -0.69
Combinations/Pair 1.40
Mean z-score -1.19
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4240991 100 - 23771897
AAUGUAUACAGCCGAAUUAACCAAUAACCUUUUUUAAAGUGCUGUGGGGACCAGUGUCCACCGUGCGAAAAGAUUUGUGGCAAGCAGCUGAGCUGCAACA
..........((((.......(((....((((((....(..(.(((((.(....).))))).)..)))))))..)))))))..(((((...))))).... ( -24.01)
>DroSec_CAF1 2649 98 - 1
AAGGUAUA--ACCAAAUUAACCAUUAACCCUUUUUUAAGUGCUGCGGGGACCAGUGUCCGCCGUGCGAAAAGAUUUGUGGCAAGCAGCUGAGCUGCAACA
..((....--.)).......((((.....((((((...(..(.(((((.(....).))))).)..)))))))....))))...(((((...))))).... ( -27.30)
>DroSim_CAF1 2644 98 - 1
AAGGUAUA--ACCAAAUUAACCAUUAACUCUUUUUUAAGUGCUGCGGGGACCAGUGCCCGCCGUGCGAAAAGAUUUGUGGCAAGCAGCUGAGCUGCAACA
..((....--.)).......((((....(((((((...(..(.(((((.(....).))))).)..))))))))...))))...(((((...))))).... ( -31.60)
>DroEre_CAF1 2633 97 - 1
AAUGUAUU--AAGAAAUUCAUCAUAAAAUA-UUUUUAAGUGCUGUGGAGACCUGUGUCCACCGUGCGAAAAGAUUUGUGGCAAGCAGUUGAGCUGCAACA
........--..........((((((...(-(((((..(..(.(((((.(....).))))).)..)..))))))))))))...((((.....)))).... ( -23.70)
>DroYak_CAF1 2634 97 - 1
AAUAUAUU--AACAAACUCAUUAAUAUAUA-UUUUAUAGUGUUGUGGAGAUCAGUGUCCACCGUGCGAAAAGAUUUGCGGCAAGCAGCUGAGCUGCAACA
.(((((((--((........))))))))).-........(((((..(...(((((((...((((............))))...))).)))).)..))))) ( -23.30)
>DroAna_CAF1 2840 92 - 1
AUUUUUUA--ACCGA-----CU-AUGACUAUUAUUACAGUGCUGCGGCGACCAGUGUCCACCGUGUGAAAAGAUUUGUGGCAAGCAACUGAGCUGCAACA
........--....(-----((-.(((......))).)))(.((((((...((((((((((.((.(....).))..))))...)).)))).)))))).). ( -18.80)
>consensus
AAUGUAUA__ACCAAAUUAACCAAUAACUAUUUUUAAAGUGCUGCGGGGACCAGUGUCCACCGUGCGAAAAGAUUUGUGGCAAGCAGCUGAGCUGCAACA
......................................(..(.(((((.(....).))))).)..)........(((((((..........))))))).. (-17.74 = -17.05 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:18 2006