Locus 1460

Sequence ID 3L_DroMel_CAF1
Location 4,226,210 – 4,226,319
Length 109
Max. P 0.687999
window2272

overview

Window 2

Location 4,226,210 – 4,226,319
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -24.72
Consensus MFE -19.72
Energy contribution -20.40
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.56
Structure conservation index 0.80
SVM decision value 0.32
SVM RNA-class probability 0.687999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4226210 109 - 23771897
UACCUUCAAAUUUACAGCGCCAAGCGACGCCACGCUUGGUUUUAGAGUGACCGAACUUUAGAAAGCGGUUAAUGCUGCAAAUACCAUCCCCUGCUCCAAUAUAUACUUG
...............(((((((((((......))))))))((((((((......))))))))..(((((....)))))..............))).............. ( -26.80)
>DroSec_CAF1 1999 109 - 1
UACCUUCAAAUUUACAGCGCCAAGCGACGCCACGCUUGGUUUUAGAGUGACCGAACUUUAGAAAGCGGUUAAUGCUGCAAAUACCAUCCCCUGCUCCAACAUAUACUAG
...............(((((((((((......))))))))((((((((......))))))))..(((((....)))))..............))).............. ( -26.80)
>DroSim_CAF1 1985 109 - 1
UACCUUCAAAUUUACAGCGCCAAGCGACGCCACGCUUGGUUUUAGAGUGACCGAACUUGCGAAAGCGGUUAAUGCUGCAAAUACCAUCCCCUGCUCCAACAUAUACUAG
.........((((.((((((((((((......)))))))).......(((((......((....)))))))..)))).))))........................... ( -26.20)
>DroEre_CAF1 2086 108 - 1
UACCUUCAAAUUUACAGCGCCAAGUGACGCCACGCUUGGUUUUAGAGUGACCGAAUUUUCGAAAGCGAUUAAUUCUCUA-AUACCAUCUUUUCCUCCGACAUAUACCAA
..................((((((((......)))))))).((((((......((((..(....).))))....)))))-)............................ ( -17.00)
>DroYak_CAF1 1956 103 - 1
UACCUUCAAAUUUACAGCGCCAAGCGACGCCACGCUUGGUUUUAGAGUGACCGAACUUGUAAAAGCGAUUAACGCUGUAAAUACCAUA------UCCGACAUAUACUAA
.........(((((((((((((((((......)))))))(((((((((......)))).)))))........))))))))))......------............... ( -26.80)
>consensus
UACCUUCAAAUUUACAGCGCCAAGCGACGCCACGCUUGGUUUUAGAGUGACCGAACUUUAGAAAGCGGUUAAUGCUGCAAAUACCAUCCCCUGCUCCAACAUAUACUAG
.........((((.((((((((((((......)))))))).......((((((..(((....)))))))))..)))).))))........................... (-19.72 = -20.40 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:14 2006