Locus 1459

Sequence ID 3L_DroMel_CAF1
Location 4,223,096 – 4,223,215
Length 119
Max. P 0.598274
window2271

overview

Window 1

Location 4,223,096 – 4,223,215
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.68
Mean single sequence MFE -30.58
Consensus MFE -19.46
Energy contribution -20.02
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -1.56
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.598274
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4223096 119 + 23771897
UCAUGGGUCGCUUAUCGCCGGGUUCCACUGUAGACACAAAGCAAGUGGUCCGAGCACACGCGCCACCUACAGAUUGUUUUAUUUAUUGAGCCCCGAUAAGCACACAAUUCUUUGCUGUU-
.........((((((((..((((((....(((((...((((((((((((.((......)).))))).......))))))).))))).))))))))))))))((((((....))).))).- ( -33.11)
>DroSec_CAF1 73049 91 + 1
UCAUGGGUUGCUUAUCGCCGGGUUCCACUGUAGACACAAUG----------------------------CAGAUUGUUUUACUUAUUGAGCCCCGAUAAGCAGGCAAUUCGUUGCUGUU-
........(((((((((..((((((....(((((.(((((.----------------------------...)))))))))).....)))))))))))))))(((((....)))))...- ( -31.20)
>DroSim_CAF1 70962 91 + 1
UCAUGGGUUGCUUAUCGCCGGGUUCCACUGUAGACACAACG----------------------------CAGAUUGUUUUAUUUAUUGAGCCCCGAUAAGCAGGCAAUUCGUUGCUGUU-
........(((((((((..((((((....(((((.((((..----------------------------....))))))))).....)))))))))))))))(((((....)))))...- ( -28.20)
>DroEre_CAF1 71084 101 + 1
UCAUGGGUUGCUCAUCGCCGGGUUUCACUGUAAACACAAAGCAAGUGGU-------------------ACAGGUUGUCUUAUUUAUUGAGGCCUGAUAAGCCGGCAAUUCUUUGCUAUUU
..(((((...))))).(((((.((((((((((..(((.......))).)-------------------))))...((((((.....)))))).))).)).)))))............... ( -26.00)
>DroYak_CAF1 77219 119 + 1
UCAUGGGUGGCUUAUCGCCGGGUUUCACUGUAGACACAAAGCAAGUGGUUCGCGCACACGUGUAGCCUACGGAUUGUUUUUUUUAUUAAGCCCAGAUAAGCAGGCAAUUCUUUGCUGUU-
.........(((((((...((((((....(((((...(((((((((((((((((....)))).)))).))...))))))).))))).)))))).))))))).(((((....)))))...- ( -34.40)
>consensus
UCAUGGGUUGCUUAUCGCCGGGUUCCACUGUAGACACAAAGCAAGUGGU___________________ACAGAUUGUUUUAUUUAUUGAGCCCCGAUAAGCAGGCAAUUCUUUGCUGUU_
.........((((((((..((((((....(((((.((((..................................))))))))).....)))))))))))))).(((((....))))).... (-19.46 = -20.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:13 2006