Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,220,995 – 4,221,104 |
Length | 109 |
Max. P | 0.829419 |
Location | 4,220,995 – 4,221,104 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.95 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -16.56 |
Energy contribution | -16.38 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.15 |
Mean z-score | -2.00 |
Structure conservation index | 0.72 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4220995 109 + 23771897 AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACAUAUA----UAUUUAAAUCUAGAAAGGUCUCUUAUCUGCGACAGCAGAUGAC ........((((((...(((((......(((...-....((((((....))))))..)))......)----))))...)))))).........((((((((....)))))))). ( -21.20) >DroSec_CAF1 70669 109 + 1 AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACACAUA----UAUUUAAAUAUAUAAUGGCCACUUAUCUGCGACAGCAGAUGAC ....((((((....))))))..............-....((((((....)))))).(((((...(((----(((....))))))..)))))..((((((((....)))))))). ( -27.20) >DroSim_CAF1 68815 113 + 1 AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU-CAAAUAAUUUAAUUAAAUUAAGGCCACACAUAUGUAUAUAUAAAUAUAUAAUGGUCUCUUAUCUGUGACAGCAGAUGAC ....((((((....))))))..............-....((((((....))))))((((((....(((((((......))))))).)))))).((((((((....)))))))). ( -23.00) >DroEre_CAF1 68628 110 + 1 AUUCGACACCAUGUGGUGAUAUUUCCAAGAUAUUUUCAAUAUUUUAAUUAAAUUAACACCACACAUA----UAGUCAACUUUAUAAUGGUCCCUUAUCUGCGGCAGCAUUUGUC ....((((((((((((((..((((..(((((((.....)))))))....))))...))))))...((----(((......))))))))))........(((....)))...))) ( -20.20) >consensus AUUCGUCACUAGGUGGUGAUAUUUUCAAGGUAUU_CAAAUAAUUUAAUUAAAUUAAGGCCACACAUA____UAUUUAAAUAUAUAAUGGUCUCUUAUCUGCGACAGCAGAUGAC ....(((.....(((((((((((.....)))))).....((((((....))))))..))))).................................((((((....))))))))) (-16.56 = -16.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:12 2006