Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,217,408 – 4,217,505 |
Length | 97 |
Max. P | 0.508966 |
Location | 4,217,408 – 4,217,505 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -22.34 |
Energy contribution | -22.78 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.76 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4217408 97 - 23771897 UUUAUUCGCAAUAUUCCAAUUAGCAUGCGAUCGAUAAGAG--AGAGCGCAUACGGCUCUUUCUCUGCCAACGUCGCUGCUUCCCAUCUGUGUGAGUAUG ..((((((((...........((((.(((((.....((((--((((.((.....)).))))))))......))))))))).........)))))))).. ( -32.45) >DroEre_CAF1 65138 97 - 1 UUCAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAG--AGAGCGCACUUGGCUCUUUUGCUGCCACCGCUGCUGCUCCCCAUCUGUGUGAGUAUC ...(((((((..........(((((.(((........(((--(((((.......))))))))........))))))))...........)))))))... ( -25.79) >DroYak_CAF1 70309 99 - 1 UUUAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAGAGAGAGCGCAUUCGGCUCUUUUGCUGCCUCCGUUGCUGCUCCCCAUCCGUGUGAGUAUG ..((((((((...........((((.(((((.((..((..(((((((.......)))))))..))...)).))))))))).........)))))))).. ( -29.55) >consensus UUUAUUCGCAAUAUUCCAAUUAGCAAGCGAUCGAUAAGAG__AGAGCGCAUUCGGCUCUUUUGCUGCCACCGUUGCUGCUCCCCAUCUGUGUGAGUAUG ..((((((((...........((((.(((((.....((....(((((.......)))))....))......))))))))).........)))))))).. (-22.34 = -22.78 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:11 2006