Locus 1456

Sequence ID 3L_DroMel_CAF1
Location 4,212,610 – 4,212,702
Length 92
Max. P 0.548689
window2268

overview

Window 8

Location 4,212,610 – 4,212,702
Length 92
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 88.95
Mean single sequence MFE -26.18
Consensus MFE -19.23
Energy contribution -20.47
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.548689
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4212610 92 + 23771897
AGUGCCUCCUC--------CG-CCCCCUGGACAUCUCCGAGUGCGCUGCUCCUCCGCCUGCUCCUCAUCAU---CAUCAGCCUUGGACGGCACACCUCAAAGCG
.((((((((..--------.(-(.....(((....)))(((.(.((.((......))..)).)))).....---.....))...))).)))))........... ( -24.90)
>DroSec_CAF1 62368 92 + 1
GGUGCCUCCUC--------CG-CCCCCUGGACAUCUCCGAGUGCGCUGCUCCUCCGCCUGCUCCUCAUCAU---CAUCAGCCUUGGACGGCACACCUCAAAGCG
.((((((((..--------.(-(.....(((....)))(((.(.((.((......))..)).)))).....---.....))...))).)))))........... ( -24.70)
>DroEre_CAF1 60371 91 + 1
AGUGCCUCCUC--------CGUCCCCCUGGACACCUACGAGUG--CUGCUCCUCCGCCUGCUCCUCAUCAU---CACCAGCCUUGGACGGCACACCUCAAAGCG
.((((((((..--------.((((....))))......(((.(--(.((......))..))..))).....---..........))).)))))........... ( -24.90)
>DroYak_CAF1 65288 102 + 1
AGUGCCUCCUCCUCCACUGCGUCCCCCUAGACACCUUCGAGUG--CUGCUCCUCCGCCUGCUCCUCAUCAUGAGCAGCAGCCUUGGACGGCACACCUCAAAGCG
((((..........))))(((((......)))........(((--(((.(((...((.((((.(((.....))).))))))...)))))))))........)). ( -30.20)
>consensus
AGUGCCUCCUC________CG_CCCCCUGGACACCUCCGAGUG__CUGCUCCUCCGCCUGCUCCUCAUCAU___CAUCAGCCUUGGACGGCACACCUCAAAGCG
.((((((((...........((((....))))......(((.(.((.((......))..)).))))..................))).)))))........... (-19.23 = -20.47 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:10 2006