Locus 1455

Sequence ID 3L_DroMel_CAF1
Location 4,209,490 – 4,209,582
Length 92
Max. P 0.997414
window2267

overview

Window 7

Location 4,209,490 – 4,209,582
Length 92
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 70.60
Mean single sequence MFE -29.45
Consensus MFE -15.98
Energy contribution -17.63
Covariance contribution 1.65
Combinations/Pair 1.45
Mean z-score -2.72
Structure conservation index 0.54
SVM decision value 2.85
SVM RNA-class probability 0.997414
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4209490 92 - 23771897
AGCACAUCUCUUAGGGGCCGGAAAAGGAUUCCGAAU---------------------CUAAAUUCCGGACUCCGAGAGCCAUUAGCACAUUUCGCAAGUGUUAGUAAUGUUCU
((.(((((((((.((((((((((..((((.....))---------------------))...)))))).)))))))))..((((((((.........)))))))).)))).)) ( -28.90)
>DroVir_CAF1 68140 74 - 1
CAUUUAUUUCUUAAAUGCCUGAAAGAAAAUUCUUAU---------------------CAGAAUUUCAUAUACUA--------UGAAAUAUUUCGCAA----------UAGUCG
...............(((((((((((....)))).)---------------------))).((((((((...))--------)))))).....))).----------...... ( -11.90)
>DroSec_CAF1 59280 92 - 1
AGAAGAUCUCUUAGGGGUCGGAAAAGGAUUCCGAAU---------------------CUGAAUUCCGGACUCCGAGAGCCAUUGGCGCAUUUCGCAAGUGCUAGUAAUGUUCU
((((.(((((((.((((((((((..((((.....))---------------------))...)))).)))))))))))..((((((((.........)))))))).)).)))) ( -30.10)
>DroSim_CAF1 59884 92 - 1
AGAAGAUCUCUUAGGGGUCGGAAAAGGAUUCCGAAU---------------------CUGAAUUCCGGACUCCGAGAGCCAUUGGCACAUUUCGCAAGUGCUAGUAAUGUUCU
((((.(((((((.((((((((((..((((.....))---------------------))...)))).)))))))))))..((((((((.........)))))))).)).)))) ( -30.50)
>DroEre_CAF1 57232 113 - 1
CGAAGAUCUCUCAGGGGCCGGAAAAGGAUGCCGAAUUCCGAAUUCUGAUUUUGUAUUCUGAAUUCCGGACUCCGAGAGCCAUUGGCACAUUUCGCAAGUGCUAGUAAUCUUCU
.(((((((((((.((((((((((.(((((((.(((.((.(....).)).))))))))))...)))))).)))))))))..((((((((.........)))))))).)))))). ( -44.60)
>DroYak_CAF1 62011 100 - 1
CGAAGAUCUCUUAGGGGUCGGAAAAGGAUGCCGAAUUCUAAAUU-------------CUAAAUUCCAGACUCCGAGAGGCAUUAGCACAUUUCGCAAGUGCUAGUAAUGUUCU
.(((.(((((((.((((((((((.(((((...(....)...)))-------------))...)))).)))))))))))..((((((((.........)))))))).)).))). ( -30.70)
>consensus
AGAAGAUCUCUUAGGGGCCGGAAAAGGAUUCCGAAU_____________________CUGAAUUCCGGACUCCGAGAGCCAUUGGCACAUUUCGCAAGUGCUAGUAAUGUUCU
.(((((((((((.((((((((((.......................................)))))).)))))))))..((((((((.........)))))))).)))))). (-15.98 = -17.63 +   1.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:09 2006