| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,209,169 – 4,209,265 |
| Length | 96 |
| Max. P | 0.529811 |
| Location | 4,209,169 – 4,209,265 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -17.34 |
| Energy contribution | -17.07 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4209169 96 + 23771897 UCUUCCGCGGACAGUGGCGAUGCUGCCGAACAGCAGCAGCGCUAAGGCGCACACAUGUAAAUUCAUUUUCUGCA-AGAUCGAUAGAGAGAGUGGAAA--------- ..((((((..((((((....((((((......))))))((((....)))).))).))).......((((((((.-.....).))))))).)))))).--------- ( -32.90) >DroPse_CAF1 58337 88 + 1 ACGGCUCUGGACGCUCGAGAGGCUGCCGAACAGCAGCAGCGCUAAGGCGCACAAACUUAAAUUCAUUUUCUGUA-AGA------GA--ACGAACCAA--------- ..((((((.(.....).))))(((((......))))).((((....))))...........(((.(((((....-.))------))--).)))))..--------- ( -25.80) >DroSim_CAF1 59567 92 + 1 UCUUCCGCGGACAGUGGCGAUACUGCCGAACAGCAGCAGCGCUAAGGCGCACACAUGUAAAUUCAUUUUCUGCA---AUCGAUAGA--GAGUGGAAA--------- ..((((((((.(((((....))))))).....((((..((((....))))....(((......)))...)))).---.........--..)))))).--------- ( -27.70) >DroEre_CAF1 56941 94 + 1 UCUUCCGCGGACAGUUGCGAUACUGCCGAACAGCAGCAGCGCUAAGGCGCACACAUGUAAAUUCAUUUUCUGCA-AGAUCGACAGA--GAGUACGAA--------- ((((...(((.((((......)))))))....((((..((((....))))....(((......)))...)))))-)))(((((...--..)).))).--------- ( -23.20) >DroMoj_CAF1 63136 101 + 1 GCGACUCUGGGCGCCCGAGAGGCUGCCAAACAGCAGCAGCGCUAUAGCGCACAGAUUUAAAUUCAUUUUCUGCA-AUG--AGUCGA--GAGGCGGAAGGGGCGUGG ..........(((((((((..(((((......))))).((((....))))...........)))..(((((((.-...--......--...))))))))))))).. ( -35.02) >DroAna_CAF1 58473 98 + 1 CCUGCCGUGGACAGUGGCGAUACUGCCGAAGAGCAGCAGCGCUAAGGCGCACACAUGUAAAUUCAUUUUCUGGAAAGAUCAAUCGA--AAAAAAAAACCG------ .((((..(((.(((((....))))))))....))))..((((....))))...........((((((.(((....)))..))).))--)...........------ ( -22.80) >consensus UCUUCCGCGGACAGUGGCGAUACUGCCGAACAGCAGCAGCGCUAAGGCGCACACAUGUAAAUUCAUUUUCUGCA_AGAUCGAUAGA__GAGUAGAAA_________ .......(((.(((((....))))))))....((((..((((....))))....(((......)))...))))................................. (-17.34 = -17.07 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:08 2006