Locus 1453

Sequence ID 3L_DroMel_CAF1
Location 4,201,062 – 4,201,165
Length 103
Max. P 0.853527
window2265

overview

Window 5

Location 4,201,062 – 4,201,165
Length 103
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 76.52
Mean single sequence MFE -26.67
Consensus MFE -14.42
Energy contribution -14.42
Covariance contribution -0.00
Combinations/Pair 1.11
Mean z-score -1.96
Structure conservation index 0.54
SVM decision value 0.80
SVM RNA-class probability 0.853527
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4201062 103 + 23771897
CAGUGACGUGCUGGAUCUUACCGAUCCAAAAUCGUUCCGUGACCUAUCCAAACCCAUUGGAUGCGUAAGUAUUA-CU--GAAAAUAGAAAAAGGUGAUCAG-UUACA
..(((((....((((((.....))))))..........((.((((((((((.....))))))((....))....-..--............)))).))..)-)))). ( -25.00)
>DroPse_CAF1 48755 102 + 1
UAGUGAUGUGCUGGAUCUGACGGAUCCGAAAUCAUUCCGAGACUUGUCCAAGCCCAUUGGAUGUGUAAGUGUUGAAU--GAUUCAUAAAUGA---AAUCGCAUUAAA
...(((((((..(((((.....)))))(((.((((((.((.((((((((((.....))))))....)))).))))))--)))))........---...))))))).. ( -29.90)
>DroGri_CAF1 52640 102 + 1
CAGUGACGUGCUGGAUCUAACCGAUCCUCGUUCAUUUCGUGACUUGUCCAAGCCAAUUGGAUGCGUAAGUCUCUUCUAAAAUAAUAAAGUAU---CAUUUG-UUA-A
.(((((((....(((((.....))))).)).)))))..(.(((((((((((.....))))))....))))).)........(((((((....---..))))-)))-. ( -23.40)
>DroEre_CAF1 48736 103 + 1
CAGUGACGUGCUGGAUCUAACCGAUCCAAAAUCAUUCCGUGACCUUUCCAAACCCAUUGGAUGCGUAAGUAUUA-CU--GACCUUGAAAUGAGAUGAUCAC-UUACA
..((((.(((.((((((.....))))))..(((((..(((......(((((.....)))))(((....)))...-..--.........)))..))))))))-)))). ( -24.90)
>DroYak_CAF1 53438 103 + 1
CAGUGACGUGCUGGAUCUAACCGAUCCCAAAUCAUUCCGUGACCUAUCCAAACCAAUUGGAUGCGUAAGUAUCG-CU--GACCUCAAAAUAAGGUGAUUAG-UUACA
.(((((..((..(((((.....)))))))..)))))..(((((..(((...........(((((....))))).-..--.((((.......)))))))..)-)))). ( -26.50)
>DroPer_CAF1 49441 102 + 1
UAGUGAUGUGCUGGAUCUGACGGAUCCGAAAUCAUUCCGAGACUUGUCCAAGCCCAUUGGAUGUGUAAGUGUUGAAU--GAUUCAUAAAUGA---AAACGCAUUAAA
...(((((((..(((((.....)))))(((.((((((.((.((((((((((.....))))))....)))).))))))--)))))........---...))))))).. ( -30.30)
>consensus
CAGUGACGUGCUGGAUCUAACCGAUCCAAAAUCAUUCCGUGACCUGUCCAAACCCAUUGGAUGCGUAAGUAUUG_CU__GAUAAUAAAAUAA___GAUCAC_UUACA
........(((((((((.....)))))..............((.(((((((.....))))))).)).)))).................................... (-14.42 = -14.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:07 2006